python3Packages.scikit-posthocs: init at 0.7.0
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From 02266a00ce0eb6a089e7efe07816da1aa5152fc9 Mon Sep 17 00:00:00 2001
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From: Maksim Terpilovskii <maximtrp@gmail.com>
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Date: Sun, 31 Jul 2022 12:25:14 +0300
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Subject: [PATCH] increased abs tolerance for wilcoxon test
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---
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tests/test_posthocs.py | 2 +-
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1 file changed, 1 insertion(+), 1 deletion(-)
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diff --git a/tests/test_posthocs.py b/tests/test_posthocs.py
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index 956d808..8cc65e4 100644
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--- a/tests/test_posthocs.py
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+++ b/tests/test_posthocs.py
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@@ -471,7 +471,7 @@ class TestPosthocs(unittest.TestCase):
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[2.857818e-06, 1.230888e-05, 1]])
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results = sp.posthoc_wilcoxon(self.df.sort_index(), val_col = 'pulse', group_col = 'kind')
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- self.assertTrue(np.allclose(results, r_results))
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+ self.assertTrue(np.allclose(results, r_results, atol=1e-4))
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def test_posthoc_scheffe(self):
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--
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2.36.1
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From 5416ffba3ab01aebab3909400b5a9e847022898e Mon Sep 17 00:00:00 2001
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From: Maksim Terpilovskii <maximtrp@gmail.com>
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Date: Thu, 16 Mar 2023 00:20:02 +0300
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Subject: [PATCH] Update test_posthocs.py
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---
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tests/test_posthocs.py | 4 ++--
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1 file changed, 2 insertions(+), 2 deletions(-)
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diff --git a/tests/test_posthocs.py b/tests/test_posthocs.py
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index 8cc65e4..42ca5f3 100644
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--- a/tests/test_posthocs.py
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+++ b/tests/test_posthocs.py
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@@ -71,7 +71,7 @@ class TestPosthocs(unittest.TestCase):
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a = splt.sign_plot(x, flat=True, labels=False)
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with self.assertRaises(ValueError):
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splt.sign_plot(x.astype(float), flat=True, labels=False)
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- self.assertTrue(isinstance(a, ma._subplots.Axes))
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+ self.assertTrue(isinstance(a, ma._axes.Axes))
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def test_sign_plot_nonflat(self):
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@@ -85,7 +85,7 @@ class TestPosthocs(unittest.TestCase):
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with self.assertRaises(ValueError):
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splt.sign_plot(x.astype(np.int64), labels=False)
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- self.assertTrue(isinstance(a, ma._subplots.Axes) and isinstance(cbar, mpl.colorbar.ColorbarBase))
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+ self.assertTrue(isinstance(a, ma._axes.Axes) and isinstance(cbar, mpl.colorbar.ColorbarBase))
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# Outliers tests
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def test_outliers_iqr(self):
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--
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2.36.1
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65
pkgs/development/python-modules/scikit-posthocs/default.nix
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65
pkgs/development/python-modules/scikit-posthocs/default.nix
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{ lib
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, buildPythonPackage
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, fetchFromGitHub
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, setuptools
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, wheel
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, matplotlib
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, numpy
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, pandas
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, scipy
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, seaborn
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, statsmodels
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, pytestCheckHook
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, seaborn-data
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}:
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buildPythonPackage rec {
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pname = "scikit-posthocs";
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version = "0.7.0";
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format = "pyproject";
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src = fetchFromGitHub {
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owner = "maximtrp";
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repo = "scikit-posthocs";
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rev = "v${version}";
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hash = "sha256-IkvAc684AWEK427OGAa4qVy6leWmd3b8Dnhd5bYAt5I=";
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};
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patches = [
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# Fixed on master: https://github.com/maximtrp/scikit-posthocs/commit/02266a00ce0eb6a089e7efe07816da1aa5152fc9
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./0001-increased-abs-tolerance-for-wilcoxon-test.patch
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# Fixed on master: https://github.com/maximtrp/scikit-posthocs/commit/5416ffba3ab01aebab3909400b5a9e847022898e
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./0002-Update-test_posthocs.py.patch
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];
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nativeBuildInputs = [
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setuptools
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wheel
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];
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propagatedBuildInputs = [
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matplotlib
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numpy
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pandas
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scipy
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seaborn
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statsmodels
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];
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preCheck = ''
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# tests require to write to home directory
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export SEABORN_DATA=${seaborn-data.exercise}
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'';
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nativeCheckInputs = [
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pytestCheckHook
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];
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pythonImportsCheck = [ "scikit_posthocs" ];
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meta = with lib; {
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description = "Multiple Pairwise Comparisons (Post Hoc) Tests in Python";
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homepage = "https://github.com/maximtrp/scikit-posthocs";
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changelog = "https://github.com/maximtrp/scikit-posthocs/releases/tag/v${version}";
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license = licenses.mit;
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maintainers = with maintainers; [ mbalatsko ];
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};
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}
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@ -11649,6 +11649,8 @@ self: super: with self; {
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scikit-optimize = callPackage ../development/python-modules/scikit-optimize { };
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scikit-optimize = callPackage ../development/python-modules/scikit-optimize { };
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scikit-posthocs = callPackage ../development/python-modules/scikit-posthocs { };
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scikit-rf = callPackage ../development/python-modules/scikit-rf { };
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scikit-rf = callPackage ../development/python-modules/scikit-rf { };
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scikits-odes = callPackage ../development/python-modules/scikits-odes { };
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scikits-odes = callPackage ../development/python-modules/scikits-odes { };
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