Merge staging-next into staging

CONTRIBUTING.md

@@ -20,7 +20,7 @@ Below is a short excerpt of some points in there:
   ```
   (pkg-name | nixos/<module>): (from -> to | init at version | refactor | etc)
 
-  (Motivation for change. Additional information.)
+  (Motivation for change. Link to release notes. Additional information.)
   ```
 
   For consistency, there should not be a period at the end of the commit message's summary line (the first line of the commit message).
@@ -29,6 +29,7 @@ Below is a short excerpt of some points in there:
 
   * nginx: init at 2.0.1
   * firefox: 54.0.1 -> 55.0
+    https://www.mozilla.org/en-US/firefox/55.0/releasenotes/
   * nixos/hydra: add bazBaz option
 
     Dual baz behavior is needed to do foo.

maintainers/maintainer-list.nix

@@ -4656,6 +4656,12 @@
     githubId = 4656860;
     name = "Gaute Ravndal";
   };
+  graysonhead = {
+    email = "grayson@graysonhead.net";
+    github = "graysonhead";
+    githubId = 6179496;
+    name = "Grayson Head";
+  };
   grburst = {
     email = "GRBurst@protonmail.com";
     github = "GRBurst";

pkgs/applications/audio/audacity/0001-Use-a-different-approach-to-estimate-the-disk-space-.patch

@@ -1,355 +0,0 @@
-From deeb435829d73524df851f6f4c2d4be552c99230 Mon Sep 17 00:00:00 2001
-From: Dmitry Vedenko <dmitry@crsib.me>
-Date: Fri, 1 Oct 2021 16:21:22 +0300
-Subject: [PATCH] Use a different approach to estimate the disk space usage
-
-New a approach is a bit less precise, but removes the requirement for the "private" SQLite3 table and allows Audacity to be built against system SQLite3.
----
- cmake-proxies/sqlite/CMakeLists.txt |   5 -
- src/DBConnection.h                  |   4 +-
- src/ProjectFileIO.cpp               | 269 +++++-----------------------
- 3 files changed, 44 insertions(+), 234 deletions(-)
-
-diff --git a/cmake-proxies/sqlite/CMakeLists.txt b/cmake-proxies/sqlite/CMakeLists.txt
-index 63d70637c..d7b9b95ef 100644
---- a/cmake-proxies/sqlite/CMakeLists.txt
-+++ b/cmake-proxies/sqlite/CMakeLists.txt
-@@ -19,11 +19,6 @@ list( APPEND INCLUDES
- 
- list( APPEND DEFINES
-    PRIVATE
--      #
--      # We need the dbpage table for space calculations.
--      #
--      SQLITE_ENABLE_DBPAGE_VTAB=1
--
-       # Can't be set after a WAL mode database is initialized, so change
-       # the default here to ensure all project files get the same page 
-       # size.
-diff --git a/src/DBConnection.h b/src/DBConnection.h
-index 16a7fc9d4..07d3af95e 100644
---- a/src/DBConnection.h
-+++ b/src/DBConnection.h
-@@ -75,8 +75,8 @@ public:
-       LoadSampleBlock,
-       InsertSampleBlock,
-       DeleteSampleBlock,
--      GetRootPage,
--      GetDBPage
-+      GetSampleBlockSize,
-+      GetAllSampleBlocksSize
-    };
-    sqlite3_stmt *Prepare(enum StatementID id, const char *sql);
- 
-diff --git a/src/ProjectFileIO.cpp b/src/ProjectFileIO.cpp
-index 3b3e2e1fd..c9bc45af4 100644
---- a/src/ProjectFileIO.cpp
-+++ b/src/ProjectFileIO.cpp
-@@ -35,6 +35,7 @@ Paul Licameli split from AudacityProject.cpp
- #include "widgets/ProgressDialog.h"
- #include "wxFileNameWrapper.h"
- #include "xml/XMLFileReader.h"
-+#include "MemoryX.h"`
- 
- #undef NO_SHM
- #if !defined(__WXMSW__)
-@@ -2357,255 +2358,69 @@ int64_t ProjectFileIO::GetTotalUsage()
- }
- 
- //
--// Returns the amount of disk space used by the specified sample blockid or all
--// of the sample blocks if the blockid is 0.  It does this by using the raw SQLite
--// pages available from the "sqlite_dbpage" virtual table to traverse the SQLite
--// table b-tree described here:  https://www.sqlite.org/fileformat.html
-+// Returns the estimation of disk space used by the specified sample blockid or all
-+// of the sample blocks if the blockid is 0. This does not include small overhead
-+// of the internal SQLite structures, only the size used by the data
- //
- int64_t ProjectFileIO::GetDiskUsage(DBConnection &conn, SampleBlockID blockid /* = 0 */)
- {
--   // Information we need to track our travels through the b-tree
--   typedef struct
--   {
--      int64_t pgno;
--      int currentCell;
--      int numCells;
--      unsigned char data[65536];
--   } page;
--   std::vector<page> stack;
--
--   int64_t total = 0;
--   int64_t found = 0;
--   int64_t right = 0;
--   int rc;
-+   sqlite3_stmt* stmt = nullptr;
- 
--   // Get the rootpage for the sampleblocks table.
--   sqlite3_stmt *stmt =
--      conn.Prepare(DBConnection::GetRootPage,
--                    "SELECT rootpage FROM sqlite_master WHERE tbl_name = 'sampleblocks';");
--   if (stmt == nullptr || sqlite3_step(stmt) != SQLITE_ROW)
-+   if (blockid == 0)
-    {
--      return 0;
--   }
--
--   // And store it in our first stack frame
--   stack.push_back({sqlite3_column_int64(stmt, 0)});
-+      static const char* statement =
-+R"(SELECT 
-+	sum(length(blockid) + length(sampleformat) + 
-+	length(summin) + length(summax) + length(sumrms) + 
-+	length(summary256) + length(summary64k) +
-+	length(samples))
-+FROM sampleblocks;)";
- 
--   // All done with the statement
--   sqlite3_clear_bindings(stmt);
--   sqlite3_reset(stmt);
--
--   // Prepare/retrieve statement to read raw database page
--   stmt = conn.Prepare(DBConnection::GetDBPage,
--      "SELECT data FROM sqlite_dbpage WHERE pgno = ?1;");
--   if (stmt == nullptr)
--   {
--      return 0;
-+      stmt = conn.Prepare(DBConnection::GetAllSampleBlocksSize, statement);
-    }
--
--   // Traverse the b-tree until we've visited all of the leaf pages or until
--   // we find the one corresponding to the passed in sample blockid. Because we
--   // use an integer primary key for the sampleblocks table, the traversal will
--   // be in ascending blockid sequence.
--   do
-+   else
-    {
--      // Acces the top stack frame
--      page &pg = stack.back();
-+      static const char* statement =
-+R"(SELECT 
-+	length(blockid) + length(sampleformat) + 
-+	length(summin) + length(summax) + length(sumrms) + 
-+	length(summary256) + length(summary64k) +
-+	length(samples)
-+FROM sampleblocks WHERE blockid = ?1;)";
- 
--      // Read the page from the sqlite_dbpage table if it hasn't yet been loaded
--      if (pg.numCells == 0)
--      {
--         // Bind the page number
--         sqlite3_bind_int64(stmt, 1, pg.pgno);
-+      stmt = conn.Prepare(DBConnection::GetSampleBlockSize, statement);
-+   }
- 
--         // And retrieve the page
--         if (sqlite3_step(stmt) != SQLITE_ROW)
-+   auto cleanup = finally(
-+      [stmt]() {
-+         // Clear statement bindings and rewind statement
-+         if (stmt != nullptr)
-          {
--            // REVIEW: Likely harmless failure - says size is zero on
--            // this error.
--            // LLL: Yea, but not much else we can do.
--            return 0;
-+            sqlite3_clear_bindings(stmt);
-+            sqlite3_reset(stmt);
-          }
-+      });
- 
--         // Copy the page content to the stack frame
--         memcpy(&pg.data,
--                sqlite3_column_blob(stmt, 0),
--                sqlite3_column_bytes(stmt, 0));
--
--         // And retrieve the total number of cells within it
--         pg.numCells = get2(&pg.data[3]);
--
--         // Reset statement for next usage
--         sqlite3_clear_bindings(stmt);
--         sqlite3_reset(stmt);
--      }
--
--      //wxLogDebug("%*.*spgno %lld currentCell %d numCells %d", (stack.size() - 1) * 2, (stack.size() - 1) * 2, "", pg.pgno, pg.currentCell, pg.numCells);
--
--      // Process an interior table b-tree page
--      if (pg.data[0] == 0x05)
--      {
--         // Process the next cell if we haven't examined all of them yet
--         if (pg.currentCell < pg.numCells)
--         {
--            // Remember the right-most leaf page number.
--            right = get4(&pg.data[8]);
--
--            // Iterate over the cells.
--            //
--            // If we're not looking for a specific blockid, then we always push the
--            // target page onto the stack and leave the loop after a single iteration.
--            //
--            // Otherwise, we match the blockid against the highest integer key contained
--            // within the cell and if the blockid falls within the cell, we stack the
--            // page and stop the iteration.
--            //
--            // In theory, we could do a binary search for a specific blockid here, but
--            // because our sample blocks are always large, we will get very few cells
--            // per page...usually 6 or less.
--            //
--            // In both cases, the stacked page can be either an internal or leaf page.
--            bool stacked = false;
--            while (pg.currentCell < pg.numCells)
--            {
--               // Get the offset to this cell using the offset in the cell pointer
--               // array.
--               //
--               // The cell pointer array starts immediately after the page header
--               // at offset 12 and the retrieved offset is from the beginning of
--               // the page.
--               int celloff = get2(&pg.data[12 + (pg.currentCell * 2)]);
--
--               // Bump to the next cell for the next iteration.
--               pg.currentCell++;
--
--               // Get the page number this cell describes
--               int pagenum = get4(&pg.data[celloff]);
--
--               // And the highest integer key, which starts at offset 4 within the cell.
--               int64_t intkey = 0;
--               get_varint(&pg.data[celloff + 4], &intkey);
--
--               //wxLogDebug("%*.*sinternal - right %lld celloff %d pagenum %d intkey %lld", (stack.size() - 1) * 2, (stack.size() - 1) * 2, " ", right, celloff, pagenum, intkey);
--
--               // Stack the described page if we're not looking for a specific blockid
--               // or if this page contains the given blockid.
--               if (!blockid || blockid <= intkey)
--               {
--                  stack.push_back({pagenum, 0, 0});
--                  stacked = true;
--                  break;
--               }
--            }
--
--            // If we pushed a new page onto the stack, we need to jump back up
--            // to read the page
--            if (stacked)
--            {
--               continue;
--            }
--         }
-+   if (blockid != 0)
-+   {
-+      int rc = sqlite3_bind_int64(stmt, 1, blockid);
- 
--         // We've exhausted all the cells with this page, so we stack the right-most
--         // leaf page.  Ensure we only process it once.
--         if (right)
--         {
--            stack.push_back({right, 0, 0});
--            right = 0;
--            continue;
--         }
--      }
--      // Process a leaf table b-tree page
--      else if (pg.data[0] == 0x0d)
-+      if (rc != SQLITE_OK)
-       {
--         // Iterate over the cells
--         //
--         // If we're not looking for a specific blockid, then just accumulate the
--         // payload sizes. We will be reading every leaf page in the sampleblocks
--         // table.
--         //
--         // Otherwise we break out when we find the matching blockid. In this case,
--         // we only ever look at 1 leaf page.
--         bool stop = false;
--         for (int i = 0; i < pg.numCells; i++)
--         {
--            // Get the offset to this cell using the offset in the cell pointer
--            // array.
--            //
--            // The cell pointer array starts immediately after the page header
--            // at offset 8 and the retrieved offset is from the beginning of
--            // the page.
--            int celloff = get2(&pg.data[8 + (i * 2)]);
--
--            // Get the total payload size in bytes of the described row.
--            int64_t payload = 0;
--            int digits = get_varint(&pg.data[celloff], &payload);
--
--            // Get the integer key for this row.
--            int64_t intkey = 0;
--            get_varint(&pg.data[celloff + digits], &intkey);
--
--            //wxLogDebug("%*.*sleaf - celloff %4d intkey %lld payload %lld", (stack.size() - 1) * 2, (stack.size() - 1) * 2, " ", celloff, intkey, payload);
--
--            // Add this payload size to the total if we're not looking for a specific
--            // blockid
--            if (!blockid)
--            {
--               total += payload;
--            }
--            // Otherwise, return the payload size for a matching row
--            else if (blockid == intkey)
--            {
--               return payload;
--            }
--         }
-+         conn.ThrowException(false);
-       }
-+   }
- 
--      // Done with the current branch, so pop back up to the previous one (if any)
--      stack.pop_back();
--   } while (!stack.empty());
--
--   // Return the total used for all sample blocks
--   return total;
--}
--
--// Retrieves a 2-byte big-endian integer from the page data
--unsigned int ProjectFileIO::get2(const unsigned char *ptr)
--{
--   return (ptr[0] << 8) | ptr[1];
--}
--
--// Retrieves a 4-byte big-endian integer from the page data
--unsigned int ProjectFileIO::get4(const unsigned char *ptr)
--{
--   return ((unsigned int) ptr[0] << 24) |
--          ((unsigned int) ptr[1] << 16) |
--          ((unsigned int) ptr[2] << 8)  |
--          ((unsigned int) ptr[3]);
--}
--
--// Retrieves a variable length integer from the page data. Returns the
--// number of digits used to encode the integer and the stores the
--// value at the given location.
--int ProjectFileIO::get_varint(const unsigned char *ptr, int64_t *out)
--{
--   int64_t val = 0;
--   int i;
-+   int rc = sqlite3_step(stmt);
- 
--   for (i = 0; i < 8; ++i)
-+   if (rc != SQLITE_ROW)
-    {
--      val = (val << 7) + (ptr[i] & 0x7f);
--      if ((ptr[i] & 0x80) == 0)
--      {
--         *out = val;
--         return i + 1;
--      }
-+      conn.ThrowException(false);
-    }
- 
--   val = (val << 8) + (ptr[i] & 0xff);
--   *out = val;
-+   const int64_t size = sqlite3_column_int64(stmt, 0);
- 
--   return 9;
-+   return size;
- }
- 
- InvisibleTemporaryProject::InvisibleTemporaryProject()
--- 
-2.33.1
-

pkgs/applications/audio/audacity/default.nix

@@ -3,6 +3,7 @@
 , fetchFromGitHub
 , fetchpatch
 , cmake
+, makeWrapper
 , pkg-config
 , python3
 , gettext
@@ -20,14 +21,17 @@
 , libsndfile
 , soxr
 , flac
+, lame
 , twolame
 , expat
 , libid3tag
 , libopus
+, libuuid
 , ffmpeg_4
 , soundtouch
 , pcre
-/*, portaudio - given up fighting their portaudio.patch */
+, portaudio # given up fighting their portaudio.patch?
+, portmidi
 , linuxHeaders
 , alsa-lib
 , at-spi2-core
@@ -36,11 +40,14 @@
 , libXdmcp
 , libXtst
 , libpthreadstubs
+, libsbsms_2_3_0
 , libselinux
 , libsepol
 , libxkbcommon
 , util-linux
 , wxGTK
+, libpng
+, libjpeg
 , AppKit ? null
 , AudioToolbox ? null
 , AudioUnit ? null
@@ -58,12 +65,14 @@
 
 let
   inherit (lib) optionals;
+  pname = "audacity";
+  version = "3.1.3";
 
   wxWidgets_src = fetchFromGitHub {
-    owner = "audacity";
+    owner = pname;
     repo = "wxWidgets";
-    rev = "07e7d832c7a337aedba3537b90b2c98c4d8e2985";
-    sha256 = "1mawnkcrmqj98jp0jxlnh9xkc950ca033ccb51c7035pzmi9if9a";
+    rev = "v${version}-${pname}";
+    sha256 = "sha256-KrmYYv23DHBYKIuxMYBioCQ2e4KWdgmuREnimtm0XNU=";
     fetchSubmodules = true;
   };
 
@@ -74,41 +83,20 @@ let
   wxmac' = wxmac.overrideAttrs (oldAttrs: rec {
     src = wxWidgets_src;
   });
-
-in
-stdenv.mkDerivation rec {
-  pname = "audacity";
-  # nixpkgs-update: no auto update
-  # Humans too! Let's wait to see how the situation with
-  # https://github.com/audacity/audacity/issues/1213 develops before
-  # pulling any updates that are subject to this privacy policy. We
-  # may wish to switch to a fork, but at the time of writing
-  # (2021-07-05) it's too early to tell how well any of the forks will
-  # be maintained.
-  version = "3.0.2";
+in stdenv.mkDerivation rec {
+  inherit pname version;
 
   src = fetchFromGitHub {
-    owner = "audacity";
-    repo = "audacity";
+    owner = pname;
+    repo = pname;
     rev = "Audacity-${version}";
-    sha256 = "035qq2ff16cdl2cb9iply2bfjmhfl1dpscg79x6c9l0i9m8k41zj";
+    sha256 = "sha256-sdI4paxIHDZgoWTCekjrkFR4JFpQC6OatcnJdVXCCZk=";
   };
 
-  patches = [
-    (fetchpatch {
-      url = "https://github.com/audacity/audacity/commit/7f8135e112a0e1e8e906abab9339680d1e491441.patch";
-      sha256 = "0zp2iydd46analda9cfnbmzdkjphz5m7dynrdj5qdnmq6j3px9fw";
-      name = "audacity_xdg_paths.patch";
-    })
-    # This is required to make audacity work with nixpkgs’ sqlite
-    # https://github.com/audacity/audacity/pull/1802 rebased onto 3.0.2
-    ./0001-Use-a-different-approach-to-estimate-the-disk-space-.patch
-  ];
-
   postPatch = ''
-    touch src/RevisionIdent.h
+    mkdir src/private
   '' + lib.optionalString stdenv.isLinux ''
-    substituteInPlace src/FileNames.cpp \
+    substituteInPlace libraries/lib-files/FileNames.cpp \
       --replace /usr/include/linux/magic.h ${linuxHeaders}/include/linux/magic.h
   '';
 
@@ -119,6 +107,7 @@ stdenv.mkDerivation rec {
     python3
   ] ++ optionals stdenv.isLinux [
     linuxHeaders
+    makeWrapper
   ];
 
   buildInputs = [
@@ -126,15 +115,18 @@ stdenv.mkDerivation rec {
     ffmpeg_4
     file
     flac
+    lame
     libid3tag
     libjack2
     libmad
     libopus
+    libsbsms_2_3_0
     libsndfile
     libvorbis
     lilv
     lv2
     pcre
+    portmidi
     serd
     sord
     soundtouch
@@ -143,6 +135,7 @@ stdenv.mkDerivation rec {
     sratom
     suil
     twolame
+    portaudio
   ] ++ optionals stdenv.isLinux [
     alsa-lib # for portaudio
     at-spi2-core
@@ -154,6 +147,7 @@ stdenv.mkDerivation rec {
     libxkbcommon
     libselinux
     libsepol
+    libuuid
     util-linux
     wxGTK'
     wxGTK'.gtk
@@ -163,20 +157,49 @@ stdenv.mkDerivation rec {
     Cocoa
     CoreAudioKit
     AudioUnit AudioToolbox CoreAudio CoreServices Carbon # for portaudio
+    libpng
+    libjpeg
   ];
 
   cmakeFlags = [
-    "-Daudacity_use_ffmpeg=linked"
+    "-DAUDACITY_REV_LONG=nixpkgs"
+    "-DAUDACITY_REV_TIME=nixpkgs"
     "-DDISABLE_DYNAMIC_LOADING_FFMPEG=ON"
+    "-Daudacity_conan_enabled=Off"
+    "-Daudacity_use_ffmpeg=loaded"
   ];
 
   doCheck = false; # Test fails
 
+  # Replace audacity's wrapper, to:
+  # - put it in the right place, it shouldn't be in "$out/audacity"
+  # - Add the ffmpeg dynamic dependency
+  postInstall = lib.optionalString stdenv.isLinux ''
+    rm "$out/audacity"
+    wrapProgram "$out/bin/audacity" \
+      --prefix LD_LIBRARY_PATH : "$out/lib/audacity":${lib.makeLibraryPath [ ffmpeg_4 ]} \
+      --suffix AUDACITY_MODULES_PATH : "$out/lib/audacity/modules" \
+      --suffix AUDACITY_PATH : "$out/share/audacity"
+  '';
+
   meta = with lib; {
     description = "Sound editor with graphical UI";
-    homepage = "https://www.audacityteam.org/";
-    license = licenses.gpl2Plus;
+    homepage = "https://www.audacityteam.org";
+    changelog = "https://github.com/audacity/audacity/releases";
+    license = with licenses; [
+      gpl2Plus
+      # Must be GPL3 when building with "technologies that require it,
+      # such as the VST3 audio plugin interface".
+      # https://github.com/audacity/audacity/discussions/2142.
+      gpl3
+      # Documentation.
+      cc-by-30
+    ];
     maintainers = with maintainers; [ lheckemann veprbl ];
     platforms = platforms.unix;
+    # darwin-aarch due to qtbase broken for it.
+    # darwin-x86_64 due to
+    # https://logs.nix.ci/?attempt_id=5cbc4581-09b4-4148-82fe-0326411a56b3&key=nixos%2Fnixpkgs.152273.
+    broken = stdenv.isDarwin;
   };
 }

pkgs/applications/emulators/proton-caller/default.nix

@@ -2,16 +2,16 @@
 
 rustPlatform.buildRustPackage rec {
   pname = "proton-caller";
-  version = "2.3.2";
+  version = "3.1.0";
 
   src = fetchFromGitHub {
     owner = "caverym";
     repo = pname;
     rev = version;
-    sha256 = "sha256-k+cH86atuVoLCQ+I1zu08f4T+y0u8vnjo3VA+Otg+a4=";
+    sha256 = "sha256-eyHFKAGx8du4osoGDsMFzVE/TC/ZMPsx6mrWUPDCLJ4=";
   };
 
-  cargoSha256 = "sha256-rkgg96IdIhVXZ5y/ECUxNPyPV9Nv5XGAtlxAkILry2s=";
+  cargoSha256 = "sha256-/4+r5rvRUqQL8EVIg/22ZytXyE4+SV4UEcXiEw4795U=";
 
   meta = with lib; {
     description = "Run Windows programs with Proton";

pkgs/applications/networking/cluster/argocd-autopilot/default.nix

@@ -2,17 +2,16 @@
 
 buildGoModule rec {
   pname = "argocd-autopilot";
-  version = "0.3.0";
-  commit = "c8d17bef976649e4dc2428c14c39e30a0f846552";
+  version = "0.3.1";
 
   src = fetchFromGitHub {
     owner = "argoproj-labs";
     repo = "argocd-autopilot";
     rev = "v${version}";
-    sha256 = "sha256-tggE1T+oD/dJS9tD9xOExjhy+T1GDd0vwTerD3P2KvA=";
+    sha256 = "sha256-L8+sb0lGPuc6smOFwijRGFS+oSCxEqB5c1tG55MPlgE=";
   };
 
-  vendorSha256 = "sha256-v8UMSObE6w+ULzueEK0UFeebLqoamy/788SQLBmJZ8U=";
+  vendorSha256 = "sha256-sxPTOao3scTmiVKFyGeWPMzXQz/d0HSVmUYocNGm1vA=";
 
   proxyVendor = true;
 
@@ -24,7 +23,7 @@ buildGoModule rec {
       "-X ${package_url}.binaryName=${pname}"
       "-X ${package_url}.version=${src.rev}"
       "-X ${package_url}.buildDate=unknown"
-      "-X ${package_url}.gitCommit=${commit}"
+      "-X ${package_url}.gitCommit=${src.rev}"
       "-X ${package_url}.installationManifestURL=github.com/argoproj-labs/argocd-autopilot/manifests/base?ref=${src.rev}"
       "-X ${package_url}.installationManifestsNamespacedURL=github.com/argoproj-labs/argocd-autopilot/manifests/insecure?ref=${src.rev}"
     ];

pkgs/applications/networking/cluster/argocd/default.nix

@@ -2,20 +2,16 @@
 
 buildGoModule rec {
   pname = "argocd";
-  version = "2.3.2";
-  tag = "v${version}";
-  # Update commit to match the tag above
-  # TODO make updadeScript
-  commit = "ecc2af9dcaa12975e654cde8cbbeaffbb315f75c";
+  version = "2.3.3";
 
   src = fetchFromGitHub {
     owner = "argoproj";
     repo = "argo-cd";
-    rev = tag;
-    sha256 = "sha256-n+C4l4U3cDU+fgCnGWOYLdyjknw7n/xPEtC1i8AaU4o=";
+    rev = "v${version}";
+    sha256 = "sha256-ChgWqhkzVKhbyEA+g2flWK/WMxur7UHWXJUcLzp9RTE=";
   };
 
-  vendorSha256 = "sha256-Km+1o6yuuxJs+DNTQ/XVTUFurD5gM5ohwDc7MwJuu5s=";
+  vendorSha256 = "sha256-XrIIMnn65Y10KnVTsmw6vLE53Zra1lWNFgklmaj3gF8=";
 
   # Set target as ./cmd per release-cli
   # https://github.com/argoproj/argo-cd/blob/master/Makefile#L222
@@ -27,8 +23,8 @@ buildGoModule rec {
       "-s" "-w"
       "-X ${package_url}.version=${version}"
       "-X ${package_url}.buildDate=unknown"
-      "-X ${package_url}.gitCommit=${commit}"
-      "-X ${package_url}.gitTag=${tag}"
+      "-X ${package_url}.gitCommit=${src.rev}"
+      "-X ${package_url}.gitTag=${src.rev}"
       "-X ${package_url}.gitTreeState=clean"
     ];
 
@@ -43,7 +39,7 @@ buildGoModule rec {
 
   doInstallCheck = true;
   installCheckPhase = ''
-    $out/bin/argocd version --client | grep ${tag} > /dev/null
+    $out/bin/argocd version --client | grep ${src.rev} > /dev/null
   '';
 
   postInstall = ''

pkgs/applications/science/logic/z3/default.nix

@@ -18,78 +18,78 @@ assert ocamlBindings -> ocaml != null && findlib != null && zarith != null;
 
 with lib;
 
-stdenv.mkDerivation rec {
-  pname = "z3";
-  version = "4.8.14";
+let common = { version, sha256, patches ? [ ] }:
+  stdenv.mkDerivation rec {
+    pname = "z3";
+    inherit version sha256 patches;
+    src = fetchFromGitHub {
+      owner = "Z3Prover";
+      repo = pname;
+      rev = "z3-${version}";
+      sha256 = sha256;
+    };
 
-  src = fetchFromGitHub {
-    owner = "Z3Prover";
-    repo = pname;
-    rev = "z3-${version}";
-    sha256 = "jPSTVSndp/T7n+VxZ/g9Rjco00Up+9xeDIVkeLl1MTw=";
-  };
+    nativeBuildInputs = optional stdenv.hostPlatform.isDarwin fixDarwinDylibNames;
+    buildInputs = [ python ]
+      ++ optional javaBindings jdk
+      ++ optionals ocamlBindings [ ocaml findlib zarith ]
+    ;
+    propagatedBuildInputs = [ python.pkgs.setuptools ];
+    enableParallelBuilding = true;
 
-  nativeBuildInputs = optional stdenv.hostPlatform.isDarwin fixDarwinDylibNames;
-  buildInputs = [ python ]
-    ++ optional javaBindings jdk
-    ++ optionals ocamlBindings [ ocaml findlib zarith ]
-  ;
-  propagatedBuildInputs = [ python.pkgs.setuptools ];
-  enableParallelBuilding = true;
-
-  postPatch = optionalString ocamlBindings ''
-    export OCAMLFIND_DESTDIR=$ocaml/lib/ocaml/${ocaml.version}/site-lib
-    mkdir -p $OCAMLFIND_DESTDIR/stublibs
-  '';
-
-  configurePhase = concatStringsSep " "
-    (
-      [ "${python.interpreter} scripts/mk_make.py --prefix=$out" ]
-        ++ optional javaBindings "--java"
-        ++ optional ocamlBindings "--ml"
-        ++ optional pythonBindings "--python --pypkgdir=$out/${python.sitePackages}"
-    ) + "\n" + "cd build";
-
-  postInstall = ''
-    mkdir -p $dev $lib
-    mv $out/lib $lib/lib
-    mv $out/include $dev/include
-  '' + optionalString pythonBindings ''
-    mkdir -p $python/lib
-    mv $lib/lib/python* $python/lib/
-    ln -sf $lib/lib/libz3${stdenv.hostPlatform.extensions.sharedLibrary} $python/${python.sitePackages}/z3/lib/libz3${stdenv.hostPlatform.extensions.sharedLibrary}
-  '' + optionalString javaBindings ''
-    mkdir -p $java/share/java
-    mv com.microsoft.z3.jar $java/share/java
-    moveToOutput "lib/libz3java.${stdenv.hostPlatform.extensions.sharedLibrary}" "$java"
-  '';
-
-  outputs = [ "out" "lib" "dev" "python" ]
-    ++ optional javaBindings "java"
-    ++ optional ocamlBindings "ocaml";
-
-   passthru = {
-    updateScript = writeScript "update-z3" ''
-      #!/usr/bin/env nix-shell
-      #!nix-shell -i bash -p common-updater-scripts curl jq
-
-      set -eu -o pipefail
-
-      # Expect tags in format
-      #    [{name: "Nightly", ..., {name: "z3-vv.vv.vv", ...].
-      # Below we extract frst "z3-vv.vv" and drop "z3-" prefix.
-      newVersion="$(curl -s https://api.github.com/repos/Z3Prover/z3/releases |
-          jq 'first(.[].name|select(startswith("z3-"))|ltrimstr("z3-"))' --raw-output
-      )"
-      update-source-version ${pname} "$newVersion"
+    postPatch = optionalString ocamlBindings ''
+      export OCAMLFIND_DESTDIR=$ocaml/lib/ocaml/${ocaml.version}/site-lib
+      mkdir -p $OCAMLFIND_DESTDIR/stublibs
     '';
-   };
 
-  meta = with lib; {
-    description = "A high-performance theorem prover and SMT solver";
-    homepage = "https://github.com/Z3Prover/z3";
-    license = licenses.mit;
-    platforms = platforms.unix;
-    maintainers = with maintainers; [ thoughtpolice ttuegel ];
+    configurePhase = concatStringsSep " "
+      (
+        [ "${python.interpreter} scripts/mk_make.py --prefix=$out" ]
+          ++ optional javaBindings "--java"
+          ++ optional ocamlBindings "--ml"
+          ++ optional pythonBindings "--python --pypkgdir=$out/${python.sitePackages}"
+      ) + "\n" + "cd build";
+
+    doCheck = true;
+    checkPhase = ''
+      make test
+      ./test-z3 -a
+    '';
+
+    postInstall = ''
+      mkdir -p $dev $lib
+      mv $out/lib $lib/lib
+      mv $out/include $dev/include
+    '' + optionalString pythonBindings ''
+      mkdir -p $python/lib
+      mv $lib/lib/python* $python/lib/
+      ln -sf $lib/lib/libz3${stdenv.hostPlatform.extensions.sharedLibrary} $python/${python.sitePackages}/z3/lib/libz3${stdenv.hostPlatform.extensions.sharedLibrary}
+    '' + optionalString javaBindings ''
+      mkdir -p $java/share/java
+      mv com.microsoft.z3.jar $java/share/java
+      moveToOutput "lib/libz3java.${stdenv.hostPlatform.extensions.sharedLibrary}" "$java"
+    '';
+
+    outputs = [ "out" "lib" "dev" "python" ]
+      ++ optional javaBindings "java"
+      ++ optional ocamlBindings "ocaml";
+
+    meta = with lib; {
+      description = "A high-performance theorem prover and SMT solver";
+      homepage = "https://github.com/Z3Prover/z3";
+      license = licenses.mit;
+      platforms = platforms.unix;
+      maintainers = with maintainers; [ thoughtpolice ttuegel ];
+    };
+  };
+in
+{
+  z3_4_8 = common {
+    version = "4.8.15";
+    sha256 = "0xkwqz0y5d1lfb6kfqy8wn8n2dqalzf4c8ghmjsajc1bpdl70yc5";
+  };
+  z3_4_7 = common {
+    version = "4.7.1";
+    sha256 = "1s850r6qifwl83zzgvrb5l0jigvmymzpv18ph71hg2bcpk7kjw3d";
   };
 }

pkgs/development/ocaml-modules/z3/default.nix

@@ -7,11 +7,6 @@ else
 let z3-with-ocaml = (z3.override {
   ocamlBindings = true;
   inherit ocaml findlib zarith;
-}).overrideAttrs (o: {
-  patches = (o.patches or []) ++ [
-    # Fix build; see: https://github.com/Z3Prover/z3/issues/5776
-    ./ocamlfind.patch
-  ];
 }); in
 
 stdenv.mkDerivation {

pkgs/development/ocaml-modules/z3/ocamlfind.patch

@@ -1,13 +0,0 @@
-diff --git a/scripts/mk_util.py b/scripts/mk_util.py
-index 042e6af46..1e105b002 100644
---- a/scripts/mk_util.py
-+++ b/scripts/mk_util.py
-@@ -1995,7 +1995,7 @@ class MLComponent(Component):
- 
-             LIBZ3 = LIBZ3 + ' ' + ' '.join(map(lambda x: '-cclib ' + x, LDFLAGS.split()))
- 
--            stubs_install_path = '$$(%s printconf path)/stublibs' % OCAMLFIND
-+            stubs_install_path = '$$(%s printconf destdir)/stublibs' % OCAMLFIND
-             if not STATIC_LIB:
-                 loadpath = '-ccopt -L' + stubs_install_path
-                 dllpath = '-dllpath ' + stubs_install_path

pkgs/development/python-modules/aplpy/default.nix

@@ -11,6 +11,7 @@
 , pyregion
 , pillow
 , scikitimage
+, cython
 , shapely
 , pytest
 , pytest-astropy
@@ -18,39 +19,18 @@
 
 buildPythonPackage rec {
   pname = "aplpy";
-  version = "2.0.3";
+  version = "2.1.0";
   format = "pyproject";
 
   src = fetchPypi {
-    pname = "APLpy";
+    pname = "aplpy";
     inherit version;
-    sha256 = "239f3d83635ca4251536aeb577df7c60df77fc4d658097b92094719739aec3f3";
+    sha256 = "sha256-KCdmBwQWt7IfHsjq7pWlbSISEpfQZDyt+SQSTDaUCV4=";
   };
 
-  patches = [
-    # Fixes compatibility with astropy-helpers. This patch has been merged into
-    # the master branch as of May 2020, and should be part of the next
-    # upstream release (v2.0.3 was tagged in Feb. 2019).
-    (fetchpatch {
-      url = "https://github.com/aplpy/aplpy/pull/448.patch";
-      sha256 = "1pnzh7ykjc8hwahzbzyryrzv5a8fddgd1bmzbhagkrn6lmvhhpvq";
-      excludes = [ "tox.ini" "azure-pipelines.yml" ".circleci/config.yml" "MANIFEST.in" ".gitignore"
-       "setup.cfg" "appveyor.yml" "readthedocs.yml" "CHANGES.rst" ".gitmodules" ".travis.yml" "astropy_helpers" ];
-    })
-    # Fix for matplotlib >= 3.4 (https://github.com/aplpy/aplpy/pull/466)
-    # Note: because of a security thing, github will refuse to serve this patch from the
-    # "normal" location
-    # (https://github.com/aplpy/aplpy/commit/56c1cc694fdea69e7da8506d3212c4495adb0ca5.patch)
-    # due to the fact that it contains the PDF magic bytes, but it will serve it from
-    # this githubusercontent domain.
-    (fetchpatch {
-      url = "https://patch-diff.githubusercontent.com/raw/aplpy/aplpy/pull/466/commit/56c1cc694fdea69e7da8506d3212c4495adb0ca5.patch";
-      sha256 = "0jna2n1cgfzr0a27m5z94wwph7qg25hs7lycrdb2dp3943rb35g4";
-    })
-  ];
-
   propagatedBuildInputs = [
     numpy
+    cython
     astropy
     matplotlib
     reproject

pkgs/development/python-modules/databricks-connect/default.nix

@@ -9,14 +9,14 @@
 
 buildPythonPackage rec {
   pname = "databricks-connect";
-  version = "9.1.10";
+  version = "9.1.12";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "sha256-OR3TXO6IzqwqbBbfFf+FGIUbwTa0DoKry84e1hL0I3Q=";
+    sha256 = "sha256-o3r2qZbSAAzyxfPdf9JNDhd/WKRhDdJFfnjCI8eTEE0=";
   };
 
   sourceRoot = ".";

pkgs/development/python-modules/doc8/default.nix

@@ -14,14 +14,14 @@
 
 buildPythonPackage rec {
   pname = "doc8";
-  version = "0.10.1";
+  version = "0.11.1";
   format = "pyproject";
 
   disabled = pythonOlder "3.6";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "376e50f4e70a1ae935416ddfcf93db35dd5d4cc0e557f2ec72f0667d0ace4548";
+    sha256 = "sha256-bby1Ry79Mydj/7KGK0/e7EDIpv3Gu2fmhxOtdJylgIw=";
   };
 
   nativeBuildInputs = [

pkgs/development/python-modules/google-cloud-bigtable/default.nix

@@ -13,14 +13,14 @@
 
 buildPythonPackage rec {
   pname = "google-cloud-bigtable";
-  version = "2.7.1";
+  version = "2.8.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-TUMgrv1JNt8h6DzCNtk0Fm4LQFC73/FNfpgTs9jhkYs=";
+    hash = "sha256-FLnEEsbTie1Z/9Y8nLzvLFbxiexUL4GFa8jCcEAYK1s=";
   };
 
   propagatedBuildInputs = [

pkgs/development/python-modules/hg-git/default.nix

@@ -3,24 +3,34 @@
 , fetchPypi
 , dulwich
 , mercurial
+, pythonOlder
 }:
 
 buildPythonPackage rec {
   pname = "hg-git";
-  version = "0.10.4";
+  version = "1.0.0";
+  format = "setuptools";
+
+  disabled = pythonOlder "3.6";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "sha256-guJlIm9HPTgKw5cg/s7rFST/crAXfPxGYGeZxEJ+hcw=";
+    hash = "sha256-ORGDOWLrnImca+qPtJZmyC8hGxJNCEC+tq2V4jpGIbY=";
   };
 
-  propagatedBuildInputs = [ dulwich mercurial ];
+  propagatedBuildInputs = [
+    dulwich
+    mercurial
+  ];
+
+  pythonImportsCheck = [
+    "hggit"
+  ];
 
   meta = with lib; {
     description = "Push and pull from a Git server using Mercurial";
     homepage = "https://hg-git.github.io/";
-    maintainers = with maintainers; [ koral ];
     license = licenses.gpl2Only;
+    maintainers = with maintainers; [ koral ];
   };
-
 }

pkgs/development/python-modules/inquirer/default.nix

@@ -18,14 +18,14 @@
 
 buildPythonPackage rec {
   pname = "inquirer";
-  version = "2.9.1";
+  version = "2.9.2";
   format = "pyproject";
 
   src = fetchFromGitHub rec {
     owner = "magmax";
     repo = "python-inquirer";
     rev = "v${version}";
-    sha256 = "sha256:0vdly2k4i7bfcqc8zh2miv9dbpmqvayxk72qn9d4hr7z15wph233";
+    sha256 = "sha256-TQEZeZDl4N78dE7CXy5OwquUoHuxxjmDAC3wdxqydaQ=";
   };
 
   nativeBuildInputs = [

pkgs/development/python-modules/jupytext/default.nix

@@ -18,7 +18,7 @@
 
 buildPythonPackage rec {
   pname = "jupytext";
-  version = "1.13.7";
+  version = "1.13.8";
   format = "pyproject";
 
   disabled = pythonOlder "3.6";
@@ -26,8 +26,8 @@ buildPythonPackage rec {
   src = fetchFromGitHub {
     owner = "mwouts";
     repo = pname;
-    rev = "v${version}";
-    sha256 = "sha256-DWK5ZoPL6Ek3dXHOlZfecQKLNwBqDjMZ77XZ7YLCXKI=";
+    rev = "refs/tags/v${version}";
+    sha256 = "sha256-ebe5sQJxA8QE6eJp6vPUyMaEvZUPqzCmQ6damzo1BVo=";
   };
 
   buildInputs = [

pkgs/development/python-modules/karton-core/default.nix

@@ -8,13 +8,13 @@
 
 buildPythonPackage rec {
   pname = "karton-core";
-  version = "4.3.0";
+  version = "4.4.0";
 
   src = fetchFromGitHub {
     owner = "CERT-Polska";
     repo = "karton";
-    rev = "v${version}";
-    sha256 = "sha256-pIYDY+pie4xqH11UHBal7/+MVmJDgNCFVpSD9we9ZPA=";
+    rev = "refs/tags/v${version}";
+    sha256 = "sha256-TwTq44l/Nx+FQ6tFZHat4SPGOmHSwYfg7ShbGnxpkVw=";
   };
 
   propagatedBuildInputs = [ minio redis ];

pkgs/development/python-modules/lektor/default.nix

@@ -1,58 +1,84 @@
 { lib
-, buildPythonPackage
-, fetchFromGitHub
-, click
-, filetype
-, watchdog
-, exifread
-, requests
-, mistune
-, inifile
 , Babel
-, jinja2
+, buildPythonPackage
+, click
+, exifread
+, fetchFromGitHub
+, filetype
 , flask
+, inifile
+, jinja2
+, marshmallow
+, marshmallow-dataclass
+, mistune
+, pip
 , pyopenssl
-, ndg-httpsclient
-, pytestCheckHook
-, pytest-cov
+, pytest-click
 , pytest-mock
 , pytest-pylint
-, pytest-click
+, pytestCheckHook
+, pythonOlder
 , python-slugify
-, isPy27
-, functools32
+, requests
 , setuptools
+, watchdog
+, werkzeug
 }:
 
 buildPythonPackage rec {
   pname = "lektor";
-  version = "3.3.2";
+  version = "3.3.3";
   format = "pyproject";
 
+  disabled = pythonOlder "3.7";
+
   src = fetchFromGitHub {
     owner = "lektor";
-    repo = "lektor";
-    rev = "v${version}";
-    sha256 = "sha256-PNHQ87aO+b1xseupIOsO7MXdr16s0gjoHGnZhPlKKRY=";
+    repo = pname;
+    rev = "refs/tags/v${version}";
+    hash = "sha256-3jPN4VQdIUVjSSGJxPek2RrnXzCwkDxoEBqk4vuL+nc=";
   };
 
   propagatedBuildInputs = [
-    click filetype watchdog exifread requests mistune inifile Babel jinja2
-    flask pyopenssl python-slugify ndg-httpsclient setuptools
-  ] ++ lib.optionals isPy27 [ functools32 ];
-
-  checkInputs = [
-    pytestCheckHook pytest-cov pytest-mock pytest-pylint pytest-click
+    Babel
+    click
+    exifread
+    filetype
+    flask
+    inifile
+    jinja2
+    marshmallow
+    marshmallow-dataclass
+    mistune
+    pip
+    pyopenssl
+    python-slugify
+    requests
+    setuptools
+    watchdog
+    werkzeug
   ];
 
-  # many errors -- tests assume inside of git repo, linting errors 13/317 fail
-  doCheck = false;
+  checkInputs = [
+    pytest-click
+    pytest-mock
+    pytest-pylint
+    pytestCheckHook
+  ];
+
+  pythonImportsCheck = [
+    "lektor"
+  ];
+
+  disabledTests = [
+    # Test requires network access
+    "test_path_installed_plugin_is_none"
+  ];
 
   meta = with lib; {
     description = "A static content management system";
-    homepage    = "https://www.getlektor.com/";
-    license     = licenses.bsd0;
+    homepage = "https://www.getlektor.com/";
+    license = licenses.bsd0;
     maintainers = with maintainers; [ costrouc ];
   };
-
 }

pkgs/development/python-modules/mergedb/default.nix

@@ -0,0 +1,51 @@
+{ lib
+, buildPythonPackage
+, colorama
+, fetchPypi
+, jinja2
+, pytestCheckHook
+, pythonOlder
+, pyyaml
+, setuptools
+, setuptools-scm
+}:
+
+buildPythonPackage rec {
+  pname = "mergedb";
+  version = "0.1.1";
+  format = "setuptools";
+
+  disabled = pythonOlder "3.7";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "2034c18dca23456c5b166b63d94300bcd8ec9f386e6cd639c2f66e141c0313f9";
+  };
+
+  nativeBuildInputs = [
+    setuptools-scm
+  ];
+
+  propagatedBuildInputs = [
+    pyyaml
+    colorama
+    jinja2
+    setuptools
+  ];
+
+  checkInputs = [
+    pytestCheckHook
+  ];
+
+  pythonImportsCheck = [
+    "mergedb"
+  ];
+
+  meta = with lib; {
+    description = "A tool/library for deep merging YAML files";
+    homepage = "https://github.com/graysonhead/mergedb";
+    license = licenses.gpl3Only;
+    maintainers = with maintainers; [ graysonhead ];
+  };
+}
+

pkgs/development/python-modules/nats-py/default.nix

@@ -10,7 +10,7 @@
 
 buildPythonPackage rec {
   pname = "nats-py";
-  version = "2.0.0";
+  version = "2.1.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -18,8 +18,8 @@ buildPythonPackage rec {
   src = fetchFromGitHub {
     owner = "nats-io";
     repo = "nats.py";
-    rev = "v${version}";
-    hash = "sha256-BraT30J7OIcW2NXAwjcg9PYu+kgf8f1iDjKiN9J6l7Y=";
+    rev = "refs/tags/v${version}";
+    hash = "sha256-OwxTcjHB1YLijEtTA+QFjEmihqXsiitIcCtdl/3uipI=";
   };
 
   propagatedBuildInputs = [

pkgs/development/python-modules/oslo-log/default.nix

@@ -11,16 +11,20 @@
 , pyinotify
 , python-dateutil
 , pytestCheckHook
+, pythonOlder
 }:
 
 buildPythonPackage rec {
   pname = "oslo-log";
-  version = "4.6.1";
+  version = "4.7.0";
+  format = "setuptools";
+
+  disabled = pythonOlder "3.6";
 
   src = fetchPypi {
     pname = "oslo.log";
     inherit version;
-    sha256 = "0dlnxjci9mpwhgfv19fy1z7xrdp8m95skrj5dr60all3pr7n22f6";
+    hash = "sha256-ycLEyW098LLuuTG0djvbCpBbqvKbiVgW2Vd41p+hJwc=";
   };
 
   propagatedBuildInputs = [
@@ -44,7 +48,9 @@ buildPythonPackage rec {
     "test_logging_handle_error"
   ];
 
-  pythonImportsCheck = [ "oslo_log" ];
+  pythonImportsCheck = [
+    "oslo_log"
+  ];
 
   meta = with lib; {
     description = "oslo.log library";

pkgs/development/python-modules/pex/default.nix

@@ -7,14 +7,14 @@
 
 buildPythonPackage rec {
   pname = "pex";
-  version = "2.1.76";
+  version = "2.1.77";
   format = "flit";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-a/e0tz67QR7SSYQRt3tJqgCGJLn6oi0+3HMpg8NKRH8=";
+    hash = "sha256-lvzRb+m3a3DmimzVIroobJaNe2PuMoadb48YwhxCVvA=";
   };
 
   nativeBuildInputs = [

pkgs/development/python-modules/pyhaversion/default.nix

@@ -11,7 +11,7 @@
 
 buildPythonPackage rec {
   pname = "pyhaversion";
-  version = "22.02.0";
+  version = "22.04.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.8";
@@ -19,8 +19,8 @@ buildPythonPackage rec {
   src = fetchFromGitHub {
     owner = "ludeeus";
     repo = pname;
-    rev = version;
-    sha256 = "sha256-7cBUsTEZ9yVlWsUdKs4YWm647baN09AQJI+7CTORhLc=";
+    rev = "refs/tags/${version}";
+    sha256 = "sha256-ItemkSm85Sq3utEG28mvfS7gq95veeYwhHG6BpOUJJY=";
   };
 
   propagatedBuildInputs = [

pkgs/development/python-modules/pyisy/default.nix

@@ -8,13 +8,13 @@
 
 buildPythonPackage rec {
   pname = "pyisy";
-  version = "3.0.5";
+  version = "3.0.6";
 
   src = fetchFromGitHub {
     owner = "automicus";
     repo = "PyISY";
-    rev = "v${version}";
-    hash = "sha256-lVutG/xJvVP0qS0UnEyS/9KwwqdRX6ownTKek8/VXbU=";
+    rev = "refs/tags/v${version}";
+    hash = "sha256-4thCP9Xc3dtL6IaP863sW/L4aj4+QIPFv6p0kFLGh7E=";
   };
 
   postPatch = ''

pkgs/development/python-modules/pynetgear/default.nix

@@ -7,7 +7,7 @@
 
 buildPythonPackage rec {
   pname = "pynetgear";
-  version = "0.9.3";
+  version = "0.9.4";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -15,8 +15,8 @@ buildPythonPackage rec {
   src = fetchFromGitHub {
     owner = "MatMaul";
     repo = pname;
-    rev = version;
-    sha256 = "sha256-zydSx2OZowf+1KZ5ZJ/1FDVqDZQZ4U0+q62eB1+s+WY=";
+    rev = "refs/tags/${version}";
+    sha256 = "sha256-/oxwUukYq/a0WeO/XhkMW3Jj7I1icZZUDwh1mdbGi08=";
   };
 
   propagatedBuildInputs = [

pkgs/development/python-modules/pyplaato/default.nix

@@ -7,11 +7,11 @@
 
 buildPythonPackage rec {
   pname = "pyplaato";
-  version = "0.0.15";
+  version = "0.0.16";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1nykbkv2fg1x5min07cbi44x6am48f5gw3mnyj7x2kpmj6sqfpqp";
+    sha256 = "sha256-0hbdwgkQhcjD9YbpG+bczAAi9u1QfrJdMn1g14EBPac=";
   };
 
   propagatedBuildInputs = [ aiohttp python-dateutil ];

pkgs/development/python-modules/pyscss/default.nix

@@ -11,13 +11,13 @@
 
 buildPythonPackage rec {
   pname = "pyScss";
-  version = "1.3.7";
+  version = "1.4.0";
 
   src = fetchFromGitHub {
     repo = "pyScss";
     owner = "Kronuz";
-    rev = version;
-    sha256 = "0701hziiiw67blafgpmjhzspmrss8mfvif7fw0rs8fikddwwc9g6";
+    rev = "refs/tags/v${version}";
+    sha256 = "sha256-z0y4z+/JE6rZWHAvps/taDZvutyVhxxs2gMujV5rNu4=";
   };
 
   checkInputs = [ pytest ];

pkgs/development/python-modules/pysimplegui/default.nix

@@ -7,7 +7,7 @@
 
 buildPythonPackage rec {
   pname = "pysimplegui";
-  version = "4.57.0";
+  version = "4.59.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.6";
@@ -15,7 +15,7 @@ buildPythonPackage rec {
   src = fetchPypi {
     pname = "PySimpleGUI";
     inherit version;
-    sha256 = "sha256-+Dcrv+esnthI74AFLK47sS2qI4sPvihuQlL54Zo32RM=";
+    sha256 = "sha256-GW6BwKQ36sSJNZXy7mlRW5hB5gjTUb08V33XqRNFT1E=";
   };
 
   propagatedBuildInputs = [

pkgs/development/python-modules/python-kasa/default.nix

@@ -13,7 +13,7 @@
 
 buildPythonPackage rec {
   pname = "python-kasa";
-  version = "0.4.2";
+  version = "0.4.3";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
@@ -21,8 +21,8 @@ buildPythonPackage rec {
   src = fetchFromGitHub {
     owner = pname;
     repo = pname;
-    rev = version;
-    sha256 = "sha256-5Ohks3yfqAAe+CiLEucibezmibl6TtktDXMHAhecXzA=";
+    rev = "refs/tags/${version}";
+    sha256 = "sha256-r1PoOxFPA4zYFEpw+BakzDAJ13IMfcZpTJWkRt/q4go=";
   };
 
   nativeBuildInputs = [

pkgs/development/python-modules/rdflib/default.nix

@@ -2,16 +2,23 @@
 , stdenv
 , buildPythonPackage
 , fetchFromGitHub
-, html5lib
-, isodate
-, networkx
-, nose
-, pyparsing
-, tabulate
-, pandas
-, pytestCheckHook
 , pythonOlder
-, SPARQLWrapper
+
+# propagates
+, isodate
+, pyparsing
+
+# propagates <3.8
+, importlib-metadata
+
+# extras: networkx
+, networkx
+
+# extras: html
+, html5lib
+
+# tests
+, pytestCheckHook
 }:
 
 buildPythonPackage rec {
@@ -32,34 +39,37 @@ buildPythonPackage rec {
     isodate
     html5lib
     pyparsing
-    SPARQLWrapper
+  ] ++ lib.optionals (pythonOlder "3.8") [
+    importlib-metadata
   ];
 
+  passthru.extra-requires = {
+    html = [
+      html5lib
+    ];
+    networkx = [
+      networkx
+    ];
+  };
+
   checkInputs = [
-    networkx
-    pandas
-    nose
-    tabulate
     pytestCheckHook
-  ];
+  ]
+  ++ passthru.extra-requires.networkx
+  ++ passthru.extra-requires.html;
 
   pytestFlagsArray = [
     # requires network access
-    "--deselect rdflib/__init__.py::rdflib"
-    "--deselect test/jsonld/test_onedotone.py::test_suite"
+    "--deselect=rdflib/__init__.py::rdflib"
+    "--deselect=test/jsonld/test_onedotone.py::test_suite"
   ];
 
   disabledTests = [
     # Requires network access
-    "api_key"
-    "BerkeleyDBTestCase"
-    "test_bad_password"
     "test_service"
     "testGuessFormatForParse"
   ] ++ lib.optional stdenv.isDarwin [
     # Require loopback network access
-    "test_sparqlstore"
-    "test_sparqlupdatestore_mock"
     "TestGraphHTTP"
   ];
 

pkgs/development/python-modules/teslajsonpy/default.nix

@@ -15,7 +15,7 @@
 
 buildPythonPackage rec {
   pname = "teslajsonpy";
-  version = "1.9.0";
+  version = "2.0.1";
   format = "pyproject";
 
   disabled = pythonOlder "3.6";
@@ -23,8 +23,8 @@ buildPythonPackage rec {
   src = fetchFromGitHub {
     owner = "zabuldon";
     repo = pname;
-    rev = "v${version}";
-    sha256 = "sha256-Q/ltNdr2Huvfj1RmKFopJbaR4FSM7ziWadmDKPS26vc=";
+    rev = "refs/tags/v${version}";
+    sha256 = "sha256-cplx6Zhqc/ft7l9dy1ian3zzgDqEfpO/0AF7ErX4wqk=";
   };
 
   nativeBuildInputs = [

pkgs/development/python-modules/twilio/default.nix

@@ -13,7 +13,7 @@
 
 buildPythonPackage rec {
   pname = "twilio";
-  version = "7.7.0";
+  version = "7.8.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.6";
@@ -21,8 +21,8 @@ buildPythonPackage rec {
   src = fetchFromGitHub {
     owner = "twilio";
     repo = "twilio-python";
-    rev = version;
-    sha256 = "sha256-PxLDAP/6Ddvf58eEyX3DHkdBNuLE5DlLdCEaRguqOy0=";
+    rev = "refs/tags/${version}";
+    sha256 = "sha256-r28iKUv+i8D6JLvsJA7x8T2KFzK26limIwqsXC5jjSE=";
   };
 
   propagatedBuildInputs = [

pkgs/shells/nushell/default.nix

@@ -18,16 +18,16 @@
 
 rustPlatform.buildRustPackage rec {
   pname = "nushell";
-  version = "0.44.0";
+  version = "0.60.0";
 
   src = fetchFromGitHub {
     owner = pname;
     repo = pname;
     rev = version;
-    sha256 = "sha256-LMG72XfDHA9dKiBbaB09v0rDdUKRy/Czu/lsYw6jUog=";
+    sha256 = "1qfqn2q2bam0jrr4yqq9rb29k8qj9w9g0j9x4n8h0zp28vn7c2bq";
   };
 
-  cargoSha256 = "sha256-wgaRTf+ZQ7alibCdeCjSQhhR9MC77qM1n0jakDgr114=";
+  cargoSha256 = "sha256-gZ9r1Ryp5a7MjG9yM0pGCBYtM4GylZg7Sg9wCiB+SW0=";
 
   nativeBuildInputs = [ pkg-config ]
     ++ lib.optionals (withExtraFeatures && stdenv.isLinux) [ python3 ];

pkgs/shells/nushell/use-system-zstd-lib.diff

@@ -1,32 +1,32 @@
 diff --git a/Cargo.lock b/Cargo.lock
-index 8833c3e5..0c90d2fe 100644
+index 4261c06..6d6e537 100644
 --- a/Cargo.lock
 +++ b/Cargo.lock
-@@ -3188,6 +3188,7 @@ dependencies = [
-  "nu_plugin_xpath",
+@@ -2166,6 +2166,7 @@ dependencies = [
   "rstest",
   "serial_test",
+  "tempfile",
 + "zstd-sys",
  ]
-
+ 
  [[package]]
-@@ -6954,4 +6955,5 @@ checksum = "615120c7a2431d16cf1cf979e7fc31ba7a5b5e5707b29c8a99e5dbf8a8392a33"
+@@ -4962,4 +4963,5 @@ checksum = "fc49afa5c8d634e75761feda8c592051e7eeb4683ba827211eb0d731d3402ea8"
  dependencies = [
   "cc",
   "libc",
 + "pkg-config",
  ]
 diff --git a/Cargo.toml b/Cargo.toml
-index 89e8a311..4cc2331a 100644
+index e214da1..b78919a 100644
 --- a/Cargo.toml
 +++ b/Cargo.toml
-@@ -63,6 +63,9 @@ serial_test = "0.5.1"
- hamcrest2 = "0.3.0"
- rstest = "0.10.0"
-
+@@ -67,6 +69,9 @@ hamcrest2 = "0.3.0"
+ rstest = "0.12.0"
+ itertools = "0.10.3"
+ 
 +# Specify that the indirect dependency ztsd-sys should pick up the system zstd C library
 +zstd-sys = { version = "1", features = [ "pkg-config" ] }
 +
- [build-dependencies]
-
- [features]
+ [target.'cfg(windows)'.build-dependencies]
+ embed-resource = "1"
+ 

pkgs/tools/security/cosign/default.nix

@@ -2,13 +2,13 @@
 
 buildGoModule rec {
   pname = "cosign";
-  version = "1.6.0";
+  version = "1.7.1";
 
   src = fetchFromGitHub {
     owner = "sigstore";
     repo = pname;
     rev = "v${version}";
-    sha256 = "sha256-jAkTIO+tmb1vjS2eRWU9Fau7qzPCBlXJCk00iwNpULE=";
+    sha256 = "sha256-TyU5aznt3xra23Q52LUmvWlHYkw0s7E3Wqw9ppmzScw=";
   };
 
   buildInputs = lib.optional (stdenv.isLinux && pivKeySupport) (lib.getDev pcsclite)
@@ -16,7 +16,7 @@ buildGoModule rec {
 
   nativeBuildInputs = [ pkg-config installShellFiles ];
 
-  vendorSha256 = "sha256-E9zeRlPIIoXo/EfagHC3aDnW747SdsPiqIA384D7NQI=";
+  vendorSha256 = "sha256-WhixkCKW/vQ6J3vJp+KX0JmZxHN38nzzAi5TS2lF3CM=";
 
   subPackages = [
     "cmd/cosign"

pkgs/tools/security/whatweb/Gemfile

@@ -0,0 +1,6 @@
+source 'https://rubygems.org'
+gem 'ipaddr'
+gem 'addressable'
+gem 'json'
+gem 'mongo'
+gem 'rchardet'

pkgs/tools/security/whatweb/Gemfile.lock

@@ -0,0 +1,25 @@
+GEM
+  remote: https://rubygems.org/
+  specs:
+    addressable (2.8.0)
+      public_suffix (>= 2.0.2, < 5.0)
+    bson (4.14.1)
+    ipaddr (1.2.4)
+    json (2.6.1)
+    mongo (2.17.1)
+      bson (>= 4.8.2, < 5.0.0)
+    public_suffix (4.0.6)
+    rchardet (1.8.0)
+
+PLATFORMS
+  ruby
+
+DEPENDENCIES
+  addressable
+  ipaddr
+  json
+  mongo
+  rchardet
+
+BUNDLED WITH
+   2.1.4

pkgs/tools/security/whatweb/default.nix

@@ -0,0 +1,50 @@
+{ lib, stdenv, fetchFromGitHub, bundlerEnv, ruby }:
+
+let
+  gems = bundlerEnv {
+    name = "whatweb-env";
+    inherit ruby;
+    gemdir = ./.;
+  };
+
+in stdenv.mkDerivation rec {
+  pname = "whatweb";
+  version = "0.5.5";
+
+  src = fetchFromGitHub {
+    owner = "urbanadventurer";
+    repo = "whatweb";
+    rev = "v${version}";
+    sha256 = "sha256-HLF55x4C8n8aPO4SI0d6Z9wZe80krtUaGUFmMaYRBIE=";
+  };
+
+  prePatch = ''
+    substituteInPlace Makefile \
+      --replace "/usr/local" "$out" \
+      --replace "/usr" "$out"
+  '';
+
+  buildInputs = [ gems ];
+
+  installPhase = ''
+    runHook preInstall
+
+    raw=$out/share/whatweb/whatweb
+    rm $out/bin/whatweb
+    cat << EOF >> $out/bin/whatweb
+    #!/bin/sh -e
+    exec ${gems}/bin/bundle exec ${ruby}/bin/ruby "$raw" "\$@"
+    EOF
+    chmod +x $out/bin/whatweb
+
+    runHook postInstall
+  '';
+
+  meta = with lib; {
+    description = "Next generation web scanner";
+    homepage = "https://github.com/urbanadventurer/whatweb";
+    license = licenses.gpl2Only;
+    maintainers = with maintainers; [ wolfangaukang ];
+    platforms = platforms.unix;
+  };
+}

pkgs/tools/security/whatweb/gemset.nix

@@ -0,0 +1,74 @@
+{
+  addressable = {
+    dependencies = ["public_suffix"];
+    groups = ["default"];
+    platforms = [];
+    source = {
+      remotes = ["https://rubygems.org"];
+      sha256 = "022r3m9wdxljpbya69y2i3h9g3dhhfaqzidf95m6qjzms792jvgp";
+      type = "gem";
+    };
+    version = "2.8.0";
+  };
+  bson = {
+    groups = ["default"];
+    platforms = [];
+    source = {
+      remotes = ["https://rubygems.org"];
+      sha256 = "03n3w96vpblaxvk1qk8hq7sbsmg4nv7qdkdr8f7nfvalgpakp5i5";
+      type = "gem";
+    };
+    version = "4.14.1";
+  };
+  ipaddr = {
+    groups = ["default"];
+    platforms = [];
+    source = {
+      remotes = ["https://rubygems.org"];
+      sha256 = "13qd34nzpgp3fxfjbvaqg3dcnfr0cgl5vjvcqy0hfllbvfcklnbq";
+      type = "gem";
+    };
+    version = "1.2.4";
+  };
+  json = {
+    groups = ["default"];
+    platforms = [];
+    source = {
+      remotes = ["https://rubygems.org"];
+      sha256 = "1z9grvjyfz16ag55hg522d3q4dh07hf391sf9s96npc0vfi85xkz";
+      type = "gem";
+    };
+    version = "2.6.1";
+  };
+  mongo = {
+    dependencies = ["bson"];
+    groups = ["default"];
+    platforms = [];
+    source = {
+      remotes = ["https://rubygems.org"];
+      sha256 = "19sihy8ihi3hmdg3gxbf4qvzmjnzx8xygg9534012j9z0wmhs7h1";
+      type = "gem";
+    };
+    version = "2.17.1";
+  };
+  public_suffix = {
+    groups = ["default"];
+    platforms = [];
+    source = {
+      remotes = ["https://rubygems.org"];
+      sha256 = "1xqcgkl7bwws1qrlnmxgh8g4g9m10vg60bhlw40fplninb3ng6d9";
+      type = "gem";
+    };
+    version = "4.0.6";
+  };
+  rchardet = {
+    groups = ["default"];
+    platforms = [];
+    source = {
+      remotes = ["https://rubygems.org"];
+      sha256 = "1isj1b3ywgg2m1vdlnr41lpvpm3dbyarf1lla4dfibfmad9csfk9";
+      type = "gem";
+    };
+    version = "1.8.0";
+  };
+}

pkgs/top-level/all-packages.nix

@@ -11069,6 +11069,8 @@ with pkgs;
 
   wf-recorder = callPackage ../applications/video/wf-recorder { };
 
+  whatweb = callPackage ../tools/security/whatweb { };
+
   whipper = callPackage ../applications/audio/whipper { };
 
   whitebophir = callPackage ../servers/web-apps/whitebophir { };
@@ -32801,7 +32803,11 @@ with pkgs;
     gmp-static = gmp.override { withStatic = true; };
   };
 
-  z3 = callPackage ../applications/science/logic/z3 { python = python2; };
+
+  inherit (callPackages ../applications/science/logic/z3 { python = python2; })
+    z3_4_8
+    z3_4_7;
+  z3 = z3_4_8;
   z3_4_4_0 = callPackage ../applications/science/logic/z3/4.4.0.nix {
     python = python2;
     stdenv = gcc49Stdenv;

pkgs/top-level/python-packages.nix

@@ -5106,6 +5106,8 @@ in {
     python3Packages = self;
   });
 
+  mergedb = callPackage ../development/python-modules/mergedb { };
+
   mergedeep = callPackage ../development/python-modules/mergedeep { };
 
   merkletools = callPackage ../development/python-modules/merkletools { };