From 3a349a7ad395969bc6500f5fe849374867c03137 Mon Sep 17 00:00:00 2001
From: "Robert T. McGibbon" <rmcgibbo@gmail.com>
Date: Tue, 27 Apr 2021 12:30:31 -0400
Subject: [PATCH] python3Packages.glymur: 0.8.18 -> 0.9.3

---
 .../python-modules/glymur/default.nix         | 19 ++++++++++++-------
 1 file changed, 12 insertions(+), 7 deletions(-)

diff --git a/pkgs/development/python-modules/glymur/default.nix b/pkgs/development/python-modules/glymur/default.nix
index 9a0b1b09db6..f14245865f5 100644
--- a/pkgs/development/python-modules/glymur/default.nix
+++ b/pkgs/development/python-modules/glymur/default.nix
@@ -2,10 +2,10 @@
 , buildPythonPackage
 , fetchFromGitHub
 , numpy
-, python
 , scikitimage
 , openjpeg
 , procps
+, pytestCheckHook
 , contextlib2
 , mock
 , importlib-resources
@@ -14,13 +14,13 @@
 
 buildPythonPackage rec {
   pname = "glymur";
-  version = "0.8.18";
+  version = "0.9.3";
 
   src = fetchFromGitHub {
     owner = "quintusdias";
     repo = pname;
     rev = "v${version}";
-    sha256 = "1zbghzw1q4fljb019lsrhka9xrnn4425qnxrjbmbv7dssgkkywd7";
+    sha256 = "1xlpax56qg5qqh0s19xidgvv2483sc684zj7rh6zw1m1z9m37drr";
   };
 
   propagatedBuildInputs = [
@@ -30,16 +30,21 @@ buildPythonPackage rec {
   checkInputs = [
     scikitimage
     procps
+    pytestCheckHook
   ];
 
   postConfigure = ''
     substituteInPlace glymur/config.py \
-    --replace "path = read_config_file(libname)" "path = '${openjpeg}/lib' + libname + ${if stdenv.isDarwin then "'.dylib'" else "'.so'"}"
+    --replace "path = read_config_file(libname)" "path = '${openjpeg}/lib/lib' + libname + ${if stdenv.isDarwin then "'.dylib'" else "'.so'"}"
   '';
 
-  checkPhase = ''
-    ${python.interpreter} -m unittest discover
-  '';
+  disabledTestPaths = [
+    # this test involves glymur's different ways of finding the openjpeg path on
+    # fsh systems by reading an .rc file and such, and is obviated by the patch
+    # in postConfigure
+    "tests/test_config.py"
+  ];
+
 
   meta = with lib; {
     description = "Tools for accessing JPEG2000 files";