python3Packages.orange3: init at 3.35.0

Signed-off-by: lucasew <lucas59356@gmail.com>

pkgs/development/python-modules/orange3/default.nix

@@ -0,0 +1,164 @@
+{ lib
+, buildPythonPackage
+, copyDesktopItems
+, fetchurl
+, makeDesktopItem
+, fetchFromGitHub
+, nix-update-script
+, python
+, baycomp
+, bottleneck
+, chardet
+, cython
+, httpx
+, joblib
+, keyring
+, keyrings-alt
+, matplotlib
+, numpy
+, openpyxl
+, opentsne
+, orange-canvas-core
+, orange-widget-base
+, pandas
+, pyqtgraph
+, pyqtwebengine
+, python-louvain
+, pyyaml
+, qt5
+, qtconsole
+, requests
+, scikit-learn
+, scipy
+, sphinx
+, serverfiles
+, xlrd
+, xlsxwriter
+}:
+
+let
+self = buildPythonPackage rec {
+    pname = "orange3";
+    version = "3.35.0";
+    format = "pyproject";
+
+    src = fetchFromGitHub {
+      owner = "biolab";
+      repo = "orange3";
+      rev = "refs/tags/${version}";
+      hash = "sha256-dj/Z4uOjA4nidd45dnHZDyHZP6Fy/MGC8asqOPV7U7A=";
+    };
+
+    postPatch = ''
+      sed -i 's;\(scikit-learn\)[^$]*;\1;g' requirements-core.txt
+      sed -i 's;pyqtgraph[^$]*;;g' requirements-gui.txt # TODO: remove after bump with a version greater than 0.13.1
+    '';
+
+    nativeBuildInputs = [
+      copyDesktopItems
+      cython
+      qt5.wrapQtAppsHook
+      sphinx
+    ];
+
+    enableParallelBuilding = true;
+
+    propagatedBuildInputs = [
+      numpy
+      scipy
+      chardet
+      openpyxl
+      opentsne
+      qtconsole
+      bottleneck
+      matplotlib
+      joblib
+      requests
+      keyring
+      scikit-learn
+      pandas
+      pyqtwebengine
+      serverfiles
+      orange-canvas-core
+      python-louvain
+      xlrd
+      xlsxwriter
+      httpx
+      pyqtgraph
+      orange-widget-base
+      keyrings-alt
+      pyyaml
+      baycomp
+    ];
+
+    # FIXME: ImportError: cannot import name '_variable' from partially initialized module 'Orange.data' (most likely due to a circular import) (/build/source/Orange/data/__init__.py)
+    doCheck = false;
+
+    pythonImportsCheck = [ "Orange" "Orange.data._variable" ];
+
+    desktopItems = [
+      (makeDesktopItem {
+        name = "orange";
+        exec = "orange-canvas";
+        desktopName = "Orange Data Mining";
+        genericName = "Data Mining Suite";
+        comment = "Explore, analyze, and visualize your data";
+        icon = "orange-canvas";
+        mimeTypes = [ "application/x-extension-ows" ];
+        categories = [ "Science" "Education" "ArtificialIntelligence" "DataVisualization" "NumericalAnalysis" "Qt" ];
+        keywords = [ "Machine Learning" "Scientific Visualization" "Statistical Analysis" ];
+      })
+    ];
+
+    postInstall = ''
+      wrapProgram $out/bin/orange-canvas \
+        "${"$"}{qtWrapperArgs[@]}"
+      mkdir -p $out/share/icons/hicolor/{256x256,48x48}/apps
+      cp distribute/icon-256.png $out/share/icons/hicolor/256x256/apps/orange-canvas.png
+      cp distribute/icon-48.png $out/share/icons/hicolor/48x48/apps/orange-canvas.png
+    '';
+
+    passthru = {
+      updateScript = nix-update-script { };
+      tests.unittests = self.overridePythonAttrs (old: {
+        pname = "${old.pname}-tests";
+        format = "other";
+
+        preCheck = ''
+          export HOME=$(mktemp -d)
+          export QT_PLUGIN_PATH="${qt5.qtbase.bin}/${qt5.qtbase.qtPluginPrefix}"
+          export QT_QPA_PLATFORM_PLUGIN_PATH="${qt5.qtbase.bin}/lib/qt-${qt5.qtbase.version}/plugins";
+          export QT_QPA_PLATFORM=offscreen
+
+          rm Orange -rf
+          cp -r ${self}/${python.sitePackages}/Orange .
+          chmod +w -R .
+
+          rm Orange/tests/test_url_reader.py # uses network
+          rm Orange/tests/test_ada_boost.py # broken: The 'base_estimator' parameter of AdaBoostRegressor must be an object implementing 'fit' and 'predict' or a str among {'deprecated'}. Got None instead.
+        '';
+
+        checkPhase = ''
+          runHook preCheck
+          ${python.interpreter} -m unittest -b -v ./Orange/**/test*.py
+          runHook postCheck
+        '';
+
+        postInstall = "";
+
+        doBuild = false;
+        doInstall = false;
+
+        nativeBuildInputs = [ self ] ++ old.nativeBuildInputs;
+      });
+    };
+
+    meta = {
+      mainProgram = "orange-canvas";
+      description = "Data mining and visualization toolbox for novice and expert alike";
+      homepage = "https://orangedatamining.com/";
+      license = [ lib.licenses.gpl3Plus ];
+      maintainers = [ lib.maintainers.lucasew ];
+    };
+  };
+in self

pkgs/top-level/python-packages.nix

@@ -7580,6 +7580,8 @@ self: super: with self; {
 
   oralb-ble = callPackage ../development/python-modules/oralb-ble { };
 
+  orange3 = callPackage ../development/python-modules/orange3 { };
+
   orange-canvas-core = callPackage ../development/python-modules/orange-canvas-core { };
 
   orange-widget-base = callPackage ../development/python-modules/orange-widget-base { };