Merge pull request #217517 from savyajha/radian
This commit is contained in:
commit
46e5d1e231
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@ -13288,6 +13288,12 @@
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githubId = 8534888;
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githubId = 8534888;
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name = "Savanni D'Gerinel";
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name = "Savanni D'Gerinel";
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};
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};
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savyajha = {
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email = "savya.jha@hawkradius.com";
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github = "savyajha";
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githubId = 3996019;
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name = "Savyasachee Jha";
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};
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sayanarijit = {
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sayanarijit = {
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email = "sayanarijit@gmail.com";
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email = "sayanarijit@gmail.com";
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github = "sayanarijit";
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github = "sayanarijit";
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45
pkgs/development/python-modules/lineedit/default.nix
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45
pkgs/development/python-modules/lineedit/default.nix
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@ -0,0 +1,45 @@
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{ lib
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, buildPythonPackage
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, fetchFromGitHub
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, pygments
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, six
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, wcwidth
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, pytestCheckHook
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, pyte
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, ptyprocess
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, pexpect
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}:
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buildPythonPackage rec {
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pname = "lineedit";
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version = "0.1.6";
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src = fetchFromGitHub {
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owner = "randy3k";
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repo = pname;
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rev = "v${version}";
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sha256 = "fq2NpjIQkIq1yzXEUxi6cz80kutVqcH6MqJXHtpTFsk=";
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};
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propagatedBuildInputs = [
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pygments
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six
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wcwidth
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];
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nativeCheckInputs = [
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pytestCheckHook
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pyte
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pexpect
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ptyprocess
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];
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pythonImportsCheck = [ "lineedit" ];
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meta = with lib; {
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description = "A readline library based on prompt_toolkit which supports multiple modes";
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homepage = "https://github.com/randy3k/lineedit";
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license = licenses.mit;
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maintainers = with maintainers; [ savyajha ];
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};
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}
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71
pkgs/development/python-modules/radian/default.nix
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71
pkgs/development/python-modules/radian/default.nix
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@ -0,0 +1,71 @@
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{ lib
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, buildPythonPackage
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, fetchFromGitHub
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, pytestCheckHook
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, pyte
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, pexpect
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, ptyprocess
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, jedi
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, git
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, lineedit
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, prompt-toolkit
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, pygments
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, rchitect
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, six
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, R
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, rPackages
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}:
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buildPythonPackage rec {
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pname = "radian";
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version = "0.6.4";
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src = fetchFromGitHub {
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owner = "randy3k";
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repo = pname;
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rev = "v${version}";
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sha256 = "QEHVdyVgsZxvs+d+xeeJqwx531+6e0uPi1J3t+hJ0d0=";
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};
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postPatch = ''
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substituteInPlace setup.py --replace '"pytest-runner"' ""
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'';
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nativeBuildInputs = [
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R # needed at setup time to detect R_HOME
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];
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propagatedBuildInputs = [
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lineedit
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prompt-toolkit
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pygments
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rchitect
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six
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] ++ (with rPackages; [
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reticulate
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askpass
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]);
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nativeCheckInputs = [
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pytestCheckHook
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pyte
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pexpect
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ptyprocess
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jedi
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git
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];
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preCheck = ''
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export HOME=$TMPDIR
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export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:${R}/lib/R/lib
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'';
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pythonImportsCheck = [ "radian" ];
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meta = with lib; {
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description = "A 21 century R console";
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homepage = "https://github.com/randy3k/radian";
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license = licenses.mit;
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maintainers = with maintainers; [ savyajha ];
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};
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}
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52
pkgs/development/python-modules/rchitect/default.nix
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52
pkgs/development/python-modules/rchitect/default.nix
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@ -0,0 +1,52 @@
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{ lib
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, buildPythonPackage
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, fetchFromGitHub
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, cffi
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, six
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, pytestCheckHook
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, pytest-mock
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, R
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, rPackages }:
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buildPythonPackage rec {
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pname = "rchitect";
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version = "0.3.40";
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src = fetchFromGitHub {
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owner = "randy3k";
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repo = pname;
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rev = "v${version}";
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sha256 = "yJMiPmusZ62dd6+5VkA2uSjq57a0C3arG8CgiUUHKpk=";
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};
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postPatch = ''
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substituteInPlace setup.py --replace '"pytest-runner"' ""
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'';
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propagatedBuildInputs = [
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cffi
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six
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] ++ (with rPackages; [
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reticulate
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]);
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nativeCheckInputs = [
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pytestCheckHook
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pytest-mock
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R
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];
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preCheck = ''
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export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:${R}/lib/R/lib
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cd $TMPDIR
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'';
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pythonImportsCheck = [ "rchitect" ];
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meta = with lib; {
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description = "Interoperate R with Python";
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homepage = "https://github.com/randy3k/rchitect";
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license = licenses.mit;
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maintainers = with maintainers; [ savyajha ];
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};
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}
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37
pkgs/development/r-modules/wrapper-radian.nix
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37
pkgs/development/r-modules/wrapper-radian.nix
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{ lib
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, runCommand
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, R
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, radian
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, makeWrapper
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, recommendedPackages
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, packages
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, wrapR ? false
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}:
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runCommand (radian.name + "-wrapper") {
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preferLocalBuild = true;
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allowSubstitutes = false;
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buildInputs = [ radian ] ++ recommendedPackages ++ packages
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++ lib.optional wrapR R;
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nativeBuildInputs = [ makeWrapper ];
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passthru = { inherit recommendedPackages; };
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meta = radian.meta // {
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# To prevent builds on hydra
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hydraPlatforms = [ ];
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# prefer wrapper over the package
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priority = (radian.meta.priority or 0) - 1;
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};
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} (''
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makeWrapper "${radian}/bin/radian" "$out/bin/radian" \
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--prefix "R_LIBS_SITE" ":" "$R_LIBS_SITE"
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'' + lib.optionalString wrapR ''
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cd ${R}/bin
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for exe in *; do
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makeWrapper "${R}/bin/$exe" "$out/bin/$exe" \
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--prefix "R_LIBS_SITE" ":" "$R_LIBS_SITE"
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done
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'')
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@ -24400,6 +24400,19 @@ with pkgs;
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packages = [];
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packages = [];
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};
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};
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radianWrapper = callPackage ../development/r-modules/wrapper-radian.nix {
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recommendedPackages = with rPackages; [
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boot class cluster codetools foreign KernSmooth lattice MASS
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Matrix mgcv nlme nnet rpart spatial survival
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];
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radian = python3Packages.radian;
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# Override this attribute to register additional libraries.
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packages = [];
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# Override this attribute if you want to expose R with the same set of
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# packages as specified in radian
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wrapR = false;
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};
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rstudioWrapper = libsForQt5.callPackage ../development/r-modules/wrapper-rstudio.nix {
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rstudioWrapper = libsForQt5.callPackage ../development/r-modules/wrapper-rstudio.nix {
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recommendedPackages = with rPackages; [
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recommendedPackages = with rPackages; [
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boot class cluster codetools foreign KernSmooth lattice MASS
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boot class cluster codetools foreign KernSmooth lattice MASS
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@ -5546,6 +5546,8 @@ self: super: with self; {
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linecache2 = callPackage ../development/python-modules/linecache2 { };
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linecache2 = callPackage ../development/python-modules/linecache2 { };
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lineedit = callPackage ../development/python-modules/lineedit { };
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line_profiler = callPackage ../development/python-modules/line_profiler { };
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line_profiler = callPackage ../development/python-modules/line_profiler { };
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lingua = callPackage ../development/python-modules/lingua { };
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lingua = callPackage ../development/python-modules/lingua { };
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@ -9933,6 +9935,8 @@ self: super: with self; {
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radicale = pkgs.radicale.override { python3 = python; };
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radicale = pkgs.radicale.override { python3 = python; };
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};
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};
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radian = callPackage ../development/python-modules/radian { };
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radio_beam = callPackage ../development/python-modules/radio_beam { };
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radio_beam = callPackage ../development/python-modules/radio_beam { };
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radios = callPackage ../development/python-modules/radios { };
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radios = callPackage ../development/python-modules/radios { };
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@ -9979,6 +9983,8 @@ self: super: with self; {
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rbtools = callPackage ../development/python-modules/rbtools { };
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rbtools = callPackage ../development/python-modules/rbtools { };
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rchitect = callPackage ../development/python-modules/rchitect { };
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rcssmin = callPackage ../development/python-modules/rcssmin { };
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rcssmin = callPackage ../development/python-modules/rcssmin { };
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rdflib = callPackage ../development/python-modules/rdflib { };
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rdflib = callPackage ../development/python-modules/rdflib { };
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