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Merge pull request #40523 from arcadio/minimap2

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minimap2: init at 2.10
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Pascal Wittmann 2018-05-14 23:34:26 +02:00 committed by GitHub
parent 3189704549 e4a2b70f91
commit 4e7d08cd97
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GPG key ID: 4AEE18F83AFDEB23
2 changed files with 33 additions and 0 deletions
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31
pkgs/applications/science/biology/minimap2/default.nix Normal file
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@ -0,0 +1,31 @@
{ stdenv, fetchFromGitHub, zlib }:
stdenv.mkDerivation rec {
name = "${pname}-${version}";
pname = "minimap2";
version = "2.10";
src = fetchFromGitHub {
repo = pname;
owner = "lh3";
rev = "v${version}";
sha256 = "0b35w14j9h2q9qbh3sxc518mcx0ifsvwqr1nv70rv6mgy1cqqkw0";
};
buildInputs = [ zlib ];
installPhase = ''
mkdir -p $out/bin
cp minimap2 $out/bin
mkdir -p $out/share/man/man1
cp minimap2.1 $out/share/man/man1
'';
meta = with stdenv.lib; {
description = "A versatile pairwise aligner for genomic and spliced nucleotide sequences";
homepage = https://lh3.github.io/minimap2;
license = licenses.mit;
platforms = platforms.all;
maintainers = [ maintainers.arcadio ];
};
}

2
pkgs/top-level/all-packages.nix
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@ -19927,6 +19927,8 @@ with pkgs;
inherit (perlPackages) GetoptTabular MNI-Perllib;
};
minimap2 = callPackage ../applications/science/biology/minimap2 { };
ncbi_tools = callPackage ../applications/science/biology/ncbi-tools { };
paml = callPackage ../applications/science/biology/paml { };