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tebreak: also use python3 for tests

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This commit is contained in:
Robert Schütz 2022-01-12 05:54:32 +00:00
parent 0d6e7fed1e
commit 65e959eb9a
1 changed files with 6 additions and 6 deletions
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12
pkgs/applications/science/biology/tebreak/default.nix
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@ -1,7 +1,7 @@
{ lib, fetchFromGitHub, last, exonerate, minia, python3Packages, bwa
, samtools, findutils, python }:
{ lib, fetchFromGitHub, last, exonerate, minia, python3, bwa
, samtools, findutils }:
python3Packages.buildPythonApplication rec {
python3.pkgs.buildPythonApplication rec {
pname = "tebreak";
version = "1.1";
@ -12,8 +12,8 @@ python3Packages.buildPythonApplication rec {
sha256 = "13mgh775d8hkl340923lfwwm4r5ps70girn8d6wgfxzwzxylz8iz";
};
nativeBuildInputs = [ findutils python3Packages.cython ];
propagatedBuildInputs = with python3Packages; [
nativeBuildInputs = [ findutils python3.pkgs.cython ];
propagatedBuildInputs = with python3.pkgs; [
pysam
scipy
bx-python
@ -35,7 +35,7 @@ python3Packages.buildPythonApplication rec {
checkPhase = ''
$out/bin/tebreak -b test/data/example.ins.bam -r test/data/Homo_sapiens_chr4_50000000-60000000_assembly19.fasta -p 4 --pickle test/example.pickle --detail_out test/example.tebreak.detail.out -i lib/teref.human.fa
pushd test
${python.interpreter} checktest.py
${python3.interpreter} checktest.py
'';
meta = with lib; {