lumpy: 0.3.0 -> 0.3.1
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@ -7,13 +7,14 @@ let
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in stdenv.mkDerivation rec {
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pname = "lumpy";
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version = "0.3.0";
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version = "0.3.1";
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src = fetchFromGitHub {
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owner = "arq5x";
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repo = "lumpy-sv";
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rev = version;
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sha256 = "0azhzvmh9az9jcq0xprlzdz6w16azgszv4kshb903bwbnqirmk18";
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rev = "v${version}";
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sha256 = "0r71sg7qch8r6p6dw995znrqdj6q49hjdylhzbib2qmv8nvglhs9";
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fetchSubmodules = true;
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};
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nativeBuildInputs = [ which ];
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@ -26,6 +27,8 @@ in stdenv.mkDerivation rec {
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# Use Nix htslib over bundled version
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sed -i 's/lumpy_filter: htslib/lumpy_filter:/' Makefile
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sed -i 's|../../lib/htslib/libhts.a|-lhts|' src/filter/Makefile
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# Also make sure we use the includes from Nix's htslib
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sed -i 's|../../lib/htslib/|${htslib}|' src/filter/Makefile
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'';
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# Upstream's makefile doesn't have an install target
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