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Merge pull request #236565 from natsukium/aragorn/update

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aragorn: 1.2.38 -> 1.2.41
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Nick Cao 2023-06-13 03:51:58 -06:00 committed by GitHub
parent 0d4ee8fee9 597e4e8652
commit 80dcc617f1
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1 changed files with 34 additions and 10 deletions
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44
pkgs/applications/science/biology/aragorn/default.nix
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@ -1,28 +1,52 @@
{ lib, stdenv, fetchurl }:
{ lib
, stdenv
, fetchurl
, installShellFiles
}:
let
man = fetchurl {
url = "https://web.archive.org/web/20230608093053if_/http://www.ansikte.se/ARAGORN/Downloads/aragorn.1";
hash = "sha256-bjD22dpkQZcGR0TwMxdpaed4VZZO2NUOoAw4o66iyS4=";
};
in
stdenv.mkDerivation rec {
version = "1.2.38";
stdenv.mkDerivation (finalAttrs: {
version = "1.2.41";
pname = "aragorn";
src = fetchurl {
url = "http://mbio-serv2.mbioekol.lu.se/ARAGORN/Downloads/${pname}${version}.tgz";
sha256 = "09i1rg716smlbnixfm7q1ml2mfpaa2fpn3hwjg625ysmfwwy712b";
url = "http://www.ansikte.se/ARAGORN/Downloads/aragorn${finalAttrs.version}.c";
hash = "sha256-kqMcxcCwrRbU17AZkZibd18H0oFd8TX+bj6riPXpf0o=";
};
dontUnpack = true;
nativeBuildInputs = [
installShellFiles
];
buildPhase = ''
$CC -O3 -ffast-math -finline-functions -o aragorn aragorn${version}.c
runHook preBuild
$CC -O3 -ffast-math -finline-functions -o aragorn $src
runHook postBuild
'';
installPhase = ''
runHook preInstall
mkdir -p $out/bin && cp aragorn $out/bin
mkdir -p $out/man/1 && cp aragorn.1 $out/man/1
installManPage ${man}
runHook postInstall
'';
meta = with lib; {
description = "Detects tRNA, mtRNA, and tmRNA genes in nucleotide sequences";
homepage = "http://mbio-serv2.mbioekol.lu.se/ARAGORN/";
license = licenses.gpl2;
homepage = "http://www.ansikte.se/ARAGORN/";
license = licenses.gpl3Plus;
maintainers = [ maintainers.bzizou ];
platforms = platforms.unix;
};
}
})