pymol: 2.1.0 -> 2.3.0
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@ -1,15 +1,10 @@
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{ stdenv, fetchurl, makeDesktopItem
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{ lib, stdenv, fetchurl, fetchFromGitHub, makeDesktopItem
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, python3, python3Packages
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, python3, python3Packages
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, glew, freeglut, libpng, libxml2, tk, freetype, msgpack }:
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, glew, glm, freeglut, libpng, libxml2, tk, freetype, msgpack }:
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with stdenv.lib;
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let
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let
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pname = "pymol";
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pname = "pymol";
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ver_maj = "2";
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ver_min = "1";
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version = "${ver_maj}.${ver_min}.0";
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description = "A Python-enhanced molecular graphics tool";
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description = "A Python-enhanced molecular graphics tool";
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desktopItem = makeDesktopItem {
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desktopItem = makeDesktopItem {
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@ -22,15 +17,20 @@ let
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categories = "Graphics;Education;Science;Chemistry;";
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categories = "Graphics;Education;Science;Chemistry;";
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};
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};
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in
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in
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python3Packages.buildPythonApplication {
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python3Packages.buildPythonApplication rec {
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name = "pymol-${version}";
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inherit pname;
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src = fetchurl {
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version = "2.3.0";
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url = "mirror://sourceforge/project/pymol/pymol/${ver_maj}/pymol-v${version}.tar.bz2";
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src = fetchFromGitHub {
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sha256 = "1qpacd5w4r9a0nm5iqmkd92ym3ai00dp7v61cwd6jgakk6wfps3s";
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owner = "schrodinger";
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repo = "pymol-open-source";
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rev = "v${version}";
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sha256 = "175cqi6gfmvv49i3ws19254m7ljs53fy6y82fm1ywshq2h2c93jh";
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};
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};
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buildInputs = [ python3Packages.numpy glew freeglut libpng libxml2 tk freetype msgpack ];
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buildInputs = [ python3Packages.numpy glew glm freeglut libpng libxml2 tk freetype msgpack ];
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NIX_CFLAGS_COMPILE = "-I ${libxml2.dev}/include/libxml2";
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NIX_CFLAGS_COMPILE = "-I ${libxml2.dev}/include/libxml2 -Wno-error=format-security";
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setupPyBuildFlags = [ "--glut" ];
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installPhase = ''
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installPhase = ''
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python setup.py install --home=$out
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python setup.py install --home=$out
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@ -40,13 +40,12 @@ python3Packages.buildPythonApplication {
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postInstall = with python3Packages; ''
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postInstall = with python3Packages; ''
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wrapProgram $out/bin/pymol \
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wrapProgram $out/bin/pymol \
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--prefix PYTHONPATH : ${makeSearchPathOutput "lib" python3.sitePackages [ Pmw tkinter ]}
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--prefix PYTHONPATH : ${lib.makeSearchPathOutput "lib" python3.sitePackages [ Pmw tkinter ]}
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'';
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'';
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meta = {
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meta = {
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description = description;
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description = description;
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homepage = https://www.pymol.org/;
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homepage = https://www.pymol.org/;
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license = licenses.psfl;
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license = lib.licenses.psfl;
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broken = true;
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};
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};
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}
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}
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