Merge pull request #110688 from Mic92/umap-learn
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commit
b1c006f055
52
pkgs/development/python-modules/pynndescent/default.nix
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52
pkgs/development/python-modules/pynndescent/default.nix
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@ -0,0 +1,52 @@
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{ lib
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, buildPythonPackage
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, fetchPypi
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, fetchpatch
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, nose
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, scikitlearn
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, scipy
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, numba
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, llvmlite
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, joblib
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}:
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buildPythonPackage rec {
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pname = "pynndescent";
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version = "0.5.1";
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src = fetchPypi {
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inherit pname version;
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sha256 = "74a05a54d13573a38878781d44812ac6df97d8762a56f9bb5dd87a99911820fe";
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};
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patches = [
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# fixes tests, included in 0.5.2
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(fetchpatch {
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url = "https://github.com/lmcinnes/pynndescent/commit/ef5d8c3c3bfe976063b6621e3e0734c0c22d813b.patch";
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sha256 = "sha256-49n3kevs3wpzd4FfZVKmNpF2o1V8pJs4KOx8zCAhR3s=";
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})
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];
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checkInputs = [
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nose
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];
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propagatedBuildInputs = [
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scikitlearn
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scipy
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numba
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llvmlite
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joblib
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];
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checkPhase = ''
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nosetests
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'';
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meta = with lib; {
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description = "Nearest Neighbor Descent";
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homepage = "https://github.com/lmcinnes/pynndescent";
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license = licenses.bsd2;
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maintainers = [ maintainers.mic92 ];
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};
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}
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@ -6,22 +6,25 @@
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, scikitlearn
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, scikitlearn
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, scipy
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, scipy
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, numba
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, numba
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, pynndescent
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, tensorflow
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, pytestCheckHook
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, pytestCheckHook
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}:
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}:
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buildPythonPackage rec {
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buildPythonPackage rec {
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pname = "umap-learn";
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pname = "umap-learn";
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version = "0.4.5";
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version = "0.5.0";
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src = fetchFromGitHub {
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src = fetchFromGitHub {
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owner = "lmcinnes";
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owner = "lmcinnes";
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repo = "umap";
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repo = "umap";
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rev = version;
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rev = version;
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sha256 = "080by8h4rxr5ijx8vp8kn952chiqz029j26c04k4js4g9s7201bq";
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sha256 = "sha256-2Z5RDi4bz8hh8zMwkcCQY9NrGaVd1DJEBOmrCl2oSvM=";
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};
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};
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checkInputs = [
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checkInputs = [
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nose
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nose
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tensorflow
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pytestCheckHook
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pytestCheckHook
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];
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];
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@ -30,8 +33,13 @@ buildPythonPackage rec {
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scikitlearn
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scikitlearn
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scipy
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scipy
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numba
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numba
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pynndescent
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];
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];
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preCheck = ''
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export HOME=$TMPDIR
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'';
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disabledTests = [
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disabledTests = [
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# Plot functionality requires additional packages.
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# Plot functionality requires additional packages.
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# These test also fail with 'RuntimeError: cannot cache function' error.
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# These test also fail with 'RuntimeError: cannot cache function' error.
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@ -4867,6 +4867,8 @@ in {
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pkuseg = callPackage ../development/python-modules/pkuseg { };
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pkuseg = callPackage ../development/python-modules/pkuseg { };
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pynndescent = callPackage ../development/python-modules/pynndescent { };
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pysbd = callPackage ../development/python-modules/pysbd { };
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pysbd = callPackage ../development/python-modules/pysbd { };
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python-codon-tables = callPackage ../development/python-modules/python-codon-tables { };
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python-codon-tables = callPackage ../development/python-modules/python-codon-tables { };
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