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Merge pull request #115621 from jbedo/octopus

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octopus: 0.7.0 -> 0.7.1
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Sandro 2021-03-10 10:03:42 +01:00 committed by GitHub
parent 075fefaa03 4e1a560ae4
commit bb0bb13f32
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GPG key ID: 4AEE18F83AFDEB23
1 changed files with 15 additions and 3 deletions
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18
pkgs/applications/science/biology/octopus/default.nix
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@ -1,16 +1,28 @@
{lib, stdenv, fetchFromGitHub, cmake, boost, gmp, htslib, zlib, lzma, pkg-config}:
{lib, stdenv, fetchpatch, fetchFromGitHub, cmake, boost, gmp, htslib, zlib, lzma, pkg-config}:
stdenv.mkDerivation rec {
pname = "octopus";
version = "0.7.0";
version = "0.7.1";
src = fetchFromGitHub {
owner = "luntergroup";
repo = "octopus";
rev = "v${version}";
sha256 = "0y3g0xc3x3adbcmds6hh60023pfv1qrz6ak7jd88fg9vxi9bdrfb";
sha256 = "sha256-TZ57uKTZ87FWpLNGPY8kbML1EDM8fnEFbXR+Z3dmiao=";
};
patches = [
# Backport TZ patchs (https://github.com/luntergroup/octopus/issues/149)
(fetchpatch {
url = "https://github.com/luntergroup/octopus/commit/3dbd8cc33616129ad356e99a4dae82e4f6702250.patch";
sha256 = "sha256-UCufVU9x+L1zCEhkr/48KFYRvh8w26w8Jr+O+wULKK8=";
})
(fetchpatch {
url = "https://github.com/luntergroup/octopus/commit/af5a66a2792bd098fb53eb79fb4822625f09305e.patch";
sha256 = "sha256-r8jv6EZHfTWVLYUBau3F+ilOd9IeH8rmatorEY5LXP4=";
})
];
nativeBuildInputs = [ cmake pkg-config ];
buildInputs = [ boost gmp htslib zlib lzma ];