From cb0b77e2f5d4785feb98a067cffc369bfe2aa5ad Mon Sep 17 00:00:00 2001
From: Pavol Rusnak <pavol@rusnak.io>
Date: Sat, 2 Jan 2021 13:14:36 +0100
Subject: [PATCH] ViennaRNA: init at 2.4.17

---
 .../molecular-dynamics/viennarna/default.nix  | 37 +++++++++++++++++++
 pkgs/top-level/all-packages.nix               |  2 +
 pkgs/top-level/python-packages.nix            |  2 +
 3 files changed, 41 insertions(+)
 create mode 100644 pkgs/applications/science/molecular-dynamics/viennarna/default.nix

diff --git a/pkgs/applications/science/molecular-dynamics/viennarna/default.nix b/pkgs/applications/science/molecular-dynamics/viennarna/default.nix
new file mode 100644
index 00000000000..a68feaea1ef
--- /dev/null
+++ b/pkgs/applications/science/molecular-dynamics/viennarna/default.nix
@@ -0,0 +1,37 @@
+{ stdenv
+, fetchurl
+, gsl
+, mpfr
+, perl
+, python3
+}:
+
+stdenv.mkDerivation rec {
+  pname = "ViennaRNA";
+  version = "2.4.17";
+
+  src = fetchurl {
+    url = "https://www.tbi.univie.ac.at/RNA/download/sourcecode/2_4_x/${pname}-${version}.tar.gz";
+    sha256 = "08f1h2a8fn1s2zwf1244smiydhgwxgcnzy6irpdlmpvwygv0irmi";
+  };
+
+  buildInputs = [
+    gsl
+    mpfr
+    perl
+    python3
+  ];
+
+  configureFlags = [
+    "--with-cluster"
+    "--with-kinwalker"
+  ];
+
+  meta = with stdenv.lib; {
+    description = "Prediction and comparison of RNA secondary structures";
+    homepage = "https://www.tbi.univie.ac.at/RNA/";
+    license = licenses.unfree;
+    maintainers = with maintainers; [ prusnak ];
+    platforms = platforms.unix;
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 8f306a3246c..791a388c4e2 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -28639,6 +28639,8 @@ in
     giflib = giflib_4_1;
   };
 
+  ViennaRNA = callPackage ../applications/science/molecular-dynamics/viennarna { };
+
   viewnior = callPackage ../applications/graphics/viewnior { };
 
   vimUtils = callPackage ../misc/vim-plugins/vim-utils.nix { };
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index 05abf503128..aa9e613c406 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -7740,6 +7740,8 @@ in {
 
   vidstab = callPackage ../development/python-modules/vidstab { };
 
+  ViennaRNA = toPythonModule pkgs.ViennaRNA;
+
   viewstate = callPackage ../development/python-modules/viewstate { };
 
   vine = callPackage ../development/python-modules/vine { };