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shogun: refactor derivation

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This commit is contained in:
Sebastián Mancilla 2023-05-21 19:28:57 -04:00
parent 273b32abe2
commit c812170c74
1 changed files with 18 additions and 14 deletions
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32
pkgs/applications/science/machine-learning/shogun/default.nix
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@ -50,21 +50,21 @@ let
srcs = {
toolbox = fetchFromGitHub {
owner = pname + "-toolbox";
repo = pname;
rev = pname + "_" + version;
sha256 = "05s9dclmk7x5d7wnnj4qr6r6c827m72a44gizcv09lxr28pr9inz";
owner = "shogun-toolbox";
repo = "shogun";
rev = "shogun_${version}";
sha256 = "sha256-38aULxK50wQ2+/ERosSpRyBmssmYSGv5aaWfWSlrSRc=";
fetchSubmodules = true;
};
# The CMake external projects expect the packed archives
rxcpp = fetchurl {
url = "https://github.com/Reactive-Extensions/RxCpp/archive/v${rxcppVersion}.tar.gz";
sha256 = "0y2isr8dy2n1yjr9c5570kpc9lvdlch6jv0jvw000amwn5d3krsh";
sha256 = "sha256-UOc5WrG8KgAA3xJsaSCjbdPE7gSnFJay9MEK31DWUXg=";
};
gtest = fetchurl {
url = "https://github.com/google/googletest/archive/release-${gtestVersion}.tar.gz";
sha256 = "1n5p1m2m3fjrjdj752lf92f9wq3pl5cbsfrb49jqbg52ghkz99jq";
sha256 = "sha256-WKb0J3yivIVlIis7vVihd2CenEiOinJkk1m6UUUNt9g=";
};
};
in
@ -77,13 +77,6 @@ stdenv.mkDerivation rec {
src = srcs.toolbox;
patches = [
# Fix compile errors with json-c
# https://github.com/shogun-toolbox/shogun/pull/4104
(fetchpatch {
url = "https://github.com/shogun-toolbox/shogun/commit/365ce4c4c700736d2eec8ba6c975327a5ac2cd9b.patch";
sha256 = "158hqv4xzw648pmjbwrhxjp7qcppqa7kvriif87gn3zdn711c49s";
})
# Fix compile errors with GCC 9+
# https://github.com/shogun-toolbox/shogun/pull/4811
(fetchpatch {
@ -95,6 +88,13 @@ stdenv.mkDerivation rec {
sha256 = "sha256-AgJJKQA8vc5oKaTQDqMdwBR4hT4sn9+uW0jLe7GteJw=";
})
# Fix compile errors with json-c
# https://github.com/shogun-toolbox/shogun/pull/4104
(fetchpatch {
url = "https://github.com/shogun-toolbox/shogun/commit/365ce4c4c700736d2eec8ba6c975327a5ac2cd9b.patch";
sha256 = "sha256-OhEWwrHtD/sOcjHmPY/C9zJ8ruww8yXrRcTw38nGEJU=";
})
# Fix compile errors with Eigen 3.4
./eigen-3.4.patch
@ -126,6 +126,10 @@ stdenv.mkDerivation rec {
cmakeFlags = let
enableIf = cond: if cond then "ON" else "OFF";
excludeTestsRegex = lib.concatStringsSep "|" [
# sporadic segfault
"TrainedModelSerialization"
];
in [
"-DBUILD_META_EXAMPLES=ON"
"-DCMAKE_DISABLE_FIND_PACKAGE_ARPACK=ON"
@ -134,7 +138,7 @@ stdenv.mkDerivation rec {
"-DCMAKE_DISABLE_FIND_PACKAGE_Mosek=ON"
"-DCMAKE_DISABLE_FIND_PACKAGE_TFLogger=ON"
"-DCMAKE_DISABLE_FIND_PACKAGE_ViennaCL=ON"
"-DCMAKE_CTEST_ARGUMENTS='--exclude-regex;TrainedModelSerialization'" # Sporadic segfault
"-DCMAKE_CTEST_ARGUMENTS=--exclude-regex;'${excludeTestsRegex}'"
"-DENABLE_TESTING=${enableIf doCheck}"
"-DDISABLE_META_INTEGRATION_TESTS=ON"
"-DTRAVIS_DISABLE_META_CPP=ON"