Merge pull request #189674 from bwlang/seqtk

seqtk: init at 1.3

maintainers/maintainer-list.nix

@@ -2038,6 +2038,12 @@
     githubId = 157330;
     name = "Ben Burdette";
   };
+  bwlang = {
+    email = "brad@langhorst.com";
+    github = "bwlang";
+    githubId = 61636;
+    name = "Brad Langhorst";
+  };
   bzizou = {
     email = "Bruno@bzizou.net";
     github = "bzizou";

pkgs/applications/science/biology/seqtk/default.nix

@@ -0,0 +1,39 @@
+{ lib
+, stdenv
+, fetchFromGitHub
+, zlib
+, libdeflate
+, isa-l
+}:
+
+stdenv.mkDerivation rec {
+  pname = "seqtk";
+  version = "1.3";
+
+  src = fetchFromGitHub {
+    owner = "lh3";
+    repo = "seqtk";
+    rev = "v${version}";
+    hash = "sha256-1Hw/lnoFQumuEJg1n2C6vnWkBa+VLiEiDrosghSm360=";
+  };
+
+  buildInputs = [ zlib libdeflate isa-l ];
+
+  makeFlags = [ "CC=cc" ];
+
+  installPhase = ''
+    runHook preInstall
+
+    install -Dm755 -t $out/bin seqtk
+
+    runHook postInstall
+  '';
+
+  meta = with lib; {
+    description = "Toolkit for processing sequences in FASTA/Q formats";
+    license = licenses.mit;
+    homepage = "https://github.com/lh3/seqtk";
+    platforms = platforms.all;
+    maintainers = with maintainers; [ bwlang ];
+  };
+}

pkgs/top-level/all-packages.nix

@@ -34706,6 +34706,8 @@ with pkgs;
     stdenv = gccStdenv;
   };
 
+  seqtk = callPackage ../applications/science/biology/seqtk { };
+
   snpeff = callPackage ../applications/science/biology/snpeff { };
 
   somafm-cli = callPackage ../tools/misc/somafm-cli { };