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freebayes: add -fcommon workaround

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Workaround build failure on -fno-common toolchains like upstream
gcc-10. Otherwise build fails as:

    ld: foomatic_rip-options.o:/build/foomatic-filters-4.0.17/options.c:49: multiple definition of `cupsfilter';
      foomatic_rip-foomaticrip.o:/build/foomatic-filters-4.0.17/foomaticrip.c:158: first defined here
This commit is contained in:
Sergei Trofimovich 2022-05-14 13:18:54 +01:00
parent 197681059f
commit deaab56289
1 changed files with 6 additions and 0 deletions
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6
pkgs/applications/science/biology/freebayes/default.nix
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@ -15,6 +15,12 @@ stdenv.mkDerivation rec {
buildInputs = [ zlib bzip2 xz ];
# Workaround build failure on -fno-common toolchains like upstream
# gcc-10. Otherwise build fails as:
# ld: foomatic_rip-options.o:/build/foomatic-filters-4.0.17/options.c:49: multiple definition of `cupsfilter';
# foomatic_rip-foomaticrip.o:/build/foomatic-filters-4.0.17/foomaticrip.c:158: first defined here
NIX_CFLAGS_COMPILE = "-fcommon";
installPhase = ''
install -vD bin/freebayes bin/bamleftalign scripts/* -t $out/bin
'';