Merge pull request #95831 from cfhammill/cfh/add-rstudio-server
rstudio-server: Initial commit for rstudio-server and associated wrapper
This commit is contained in:
commit
dfa93a4725
|
@ -1950,6 +1950,12 @@
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|||
githubId = 543423;
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||||
name = "Alex Wied";
|
||||
};
|
||||
cfhammill = {
|
||||
email = "cfhammill@gmail.com";
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||||
github = "cfhammill";
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||||
githubId = 7467038;
|
||||
name = "Chris Hammill";
|
||||
};
|
||||
cfouche = {
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||||
email = "chaddai.fouche@gmail.com";
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github = "Chaddai";
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||||
|
|
|
@ -165,6 +165,14 @@
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|||
<link xlink:href="options.html#opt-services.timetagger.enable">services.timetagger</link>.
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</para>
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</listitem>
|
||||
<listitem>
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<para>
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||||
<link xlink:href="https://www.rstudio.com/products/rstudio/#rstudio-server">rstudio-server</link>,
|
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a browser-based version of the RStudio IDE for the R
|
||||
programming language. Available as
|
||||
<link xlink:href="options.html#opt-services.rstudio-server.enable">services.rstudio-server</link>.
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</para>
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</listitem>
|
||||
</itemizedlist>
|
||||
</section>
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<section xml:id="sec-release-22.05-incompatibilities">
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||||
|
|
|
@ -50,6 +50,8 @@ In addition to numerous new and upgraded packages, this release has the followin
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|||
|
||||
- [timetagger](https://timetagger.app), an open source time-tracker with an intuitive user experience and powerful reporting. [services.timetagger](options.html#opt-services.timetagger.enable).
|
||||
|
||||
- [rstudio-server](https://www.rstudio.com/products/rstudio/#rstudio-server), a browser-based version of the RStudio IDE for the R programming language. Available as [services.rstudio-server](options.html#opt-services.rstudio-server.enable).
|
||||
|
||||
## Backward Incompatibilities {#sec-release-22.05-incompatibilities}
|
||||
|
||||
- `pkgs.ghc` now refers to `pkgs.targetPackages.haskellPackages.ghc`.
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||||
|
|
|
@ -353,6 +353,7 @@ in
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|||
distcc = 321;
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||||
webdav = 322;
|
||||
pipewire = 323;
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||||
rstudio-server = 324;
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||||
|
||||
# When adding a uid, make sure it doesn't match an existing gid. And don't use uids above 399!
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|
||||
|
@ -660,6 +661,7 @@ in
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distcc = 321;
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||||
webdav = 322;
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||||
pipewire = 323;
|
||||
rstudio-server = 324;
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||||
|
||||
# When adding a gid, make sure it doesn't match an existing
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||||
# uid. Users and groups with the same name should have equal
|
||||
|
|
|
@ -394,6 +394,7 @@
|
|||
./services/development/hoogle.nix
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||||
./services/development/jupyter/default.nix
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||||
./services/development/jupyterhub/default.nix
|
||||
./services/development/rstudio-server/default.nix
|
||||
./services/development/lorri.nix
|
||||
./services/display-managers/greetd.nix
|
||||
./services/editors/emacs.nix
|
||||
|
|
107
nixos/modules/services/development/rstudio-server/default.nix
Normal file
107
nixos/modules/services/development/rstudio-server/default.nix
Normal file
|
@ -0,0 +1,107 @@
|
|||
{ config, lib, pkgs, ... }:
|
||||
|
||||
with lib;
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||||
|
||||
let
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||||
|
||||
cfg = config.services.rstudio-server;
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|
||||
rserver-conf = builtins.toFile "rserver.conf" ''
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server-working-dir=${cfg.serverWorkingDir}
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www-address=${cfg.listenAddr}
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${cfg.rserverExtraConfig}
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'';
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rsession-conf = builtins.toFile "rsession.conf" ''
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${cfg.rsessionExtraConfig}
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'';
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|
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in
|
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{
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meta.maintainers = with maintainers; [ jbedo cfhammill ];
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|
||||
options.services.rstudio-server = {
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enable = mkEnableOption "RStudio server";
|
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|
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serverWorkingDir = mkOption {
|
||||
type = types.str;
|
||||
default = "/var/lib/rstudio-server";
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||||
description = ''
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Default working directory for server (server-working-dir in rserver.conf).
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||||
'';
|
||||
};
|
||||
|
||||
listenAddr = mkOption {
|
||||
type = types.str;
|
||||
default = "127.0.0.1";
|
||||
description = ''
|
||||
Address to listen on (www-address in rserver.conf).
|
||||
'';
|
||||
};
|
||||
|
||||
package = mkOption {
|
||||
type = types.package;
|
||||
default = pkgs.rstudio-server;
|
||||
defaultText = literalExpression "pkgs.rstudio-server";
|
||||
example = literalExpression "pkgs.rstudioServerWrapper.override { packages = [ pkgs.rPackages.ggplot2 ]; }";
|
||||
description = ''
|
||||
Rstudio server package to use. Can be set to rstudioServerWrapper to provide packages.
|
||||
'';
|
||||
};
|
||||
|
||||
rserverExtraConfig = mkOption {
|
||||
type = types.str;
|
||||
default = "";
|
||||
description = ''
|
||||
Extra contents for rserver.conf.
|
||||
'';
|
||||
};
|
||||
|
||||
rsessionExtraConfig = mkOption {
|
||||
type = types.str;
|
||||
default = "";
|
||||
description = ''
|
||||
Extra contents for resssion.conf.
|
||||
'';
|
||||
};
|
||||
|
||||
};
|
||||
|
||||
config = mkIf cfg.enable
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||||
{
|
||||
systemd.services.rstudio-server = {
|
||||
description = "Rstudio server";
|
||||
|
||||
after = [ "network.target" ];
|
||||
wantedBy = [ "multi-user.target" ];
|
||||
restartTriggers = [ rserver-conf rsession-conf ];
|
||||
|
||||
serviceConfig = {
|
||||
Restart = "on-failure";
|
||||
Type = "forking";
|
||||
ExecStart = "${cfg.package}/bin/rserver";
|
||||
StateDirectory = "rstudio-server";
|
||||
RuntimeDirectory = "rstudio-server";
|
||||
};
|
||||
};
|
||||
|
||||
environment.etc = {
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"rstudio/rserver.conf".source = rserver-conf;
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"rstudio/rsession.conf".source = rsession-conf;
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"pam.d/rstudio".source = "/etc/pam.d/login";
|
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};
|
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environment.systemPackages = [ cfg.package ];
|
||||
|
||||
users = {
|
||||
users.rstudio-server = {
|
||||
uid = config.ids.uids.rstudio-server;
|
||||
description = "rstudio-server";
|
||||
group = "rstudio-server";
|
||||
};
|
||||
groups.rstudio-server = {
|
||||
gid = config.ids.gids.rstudio-server;
|
||||
};
|
||||
};
|
||||
|
||||
};
|
||||
}
|
30
nixos/tests/rstudio-server.nix
Normal file
30
nixos/tests/rstudio-server.nix
Normal file
|
@ -0,0 +1,30 @@
|
|||
import ./make-test-python.nix ({ pkgs, ... }:
|
||||
{
|
||||
name = "rstudio-server-test";
|
||||
meta.maintainers = with pkgs.lib.maintainers; [ jbedo cfhammill ];
|
||||
|
||||
nodes.machine = { config, lib, pkgs, ... }: {
|
||||
services.rstudio-server.enable = true;
|
||||
};
|
||||
|
||||
nodes.customPackageMachine = { config, lib, pkgs, ... }: {
|
||||
services.rstudio-server = {
|
||||
enable = true;
|
||||
package = pkgs.rstudioServerWrapper.override { packages = [ pkgs.rPackages.ggplot2 ]; };
|
||||
};
|
||||
};
|
||||
|
||||
users.testuser = {
|
||||
uid = 1000;
|
||||
group = "testgroup";
|
||||
};
|
||||
groups.testgroup.gid = 1000;
|
||||
|
||||
testScript = ''
|
||||
machine.wait_for_unit("rstudio-server.service")
|
||||
machine.succeed("curl -f -vvv -s http://127.0.0.1:8787")
|
||||
|
||||
customPackageMachine.wait_for_unit("rstudio-server.service")
|
||||
customPackageMachine.succeed("curl -f -vvv -s http://127.0.0.1:8787")
|
||||
'';
|
||||
})
|
|
@ -1,4 +1,5 @@
|
|||
{ lib
|
||||
, stdenv
|
||||
, mkDerivation
|
||||
, fetchurl
|
||||
, fetchpatch
|
||||
|
@ -30,6 +31,9 @@
|
|||
, nodejs
|
||||
, mkYarnModules
|
||||
, qmake
|
||||
, server ? false # build server version
|
||||
, sqlite
|
||||
, pam
|
||||
}:
|
||||
|
||||
let
|
||||
|
@ -61,149 +65,165 @@ let
|
|||
panmirrorModules = mkYarnModules {
|
||||
inherit pname version;
|
||||
packageJSON = ./package.json;
|
||||
yarnLock = ./yarn.lock;
|
||||
yarnLock = ./yarn.lock;
|
||||
yarnNix = ./yarndeps.nix;
|
||||
};
|
||||
|
||||
description = "Set of integrated tools for the R language";
|
||||
in
|
||||
mkDerivation rec {
|
||||
inherit pname version src RSTUDIO_VERSION_MAJOR RSTUDIO_VERSION_MINOR RSTUDIO_VERSION_PATCH;
|
||||
(if server then stdenv.mkDerivation else mkDerivation)
|
||||
(rec {
|
||||
inherit pname version src RSTUDIO_VERSION_MAJOR RSTUDIO_VERSION_MINOR RSTUDIO_VERSION_PATCH;
|
||||
|
||||
nativeBuildInputs = [
|
||||
cmake
|
||||
unzip
|
||||
ant
|
||||
jdk
|
||||
makeWrapper
|
||||
pandoc
|
||||
nodejs
|
||||
copyDesktopItems
|
||||
];
|
||||
nativeBuildInputs = [
|
||||
cmake
|
||||
unzip
|
||||
ant
|
||||
jdk
|
||||
makeWrapper
|
||||
pandoc
|
||||
nodejs
|
||||
] ++ lib.optional (!server) [
|
||||
copyDesktopItems
|
||||
];
|
||||
|
||||
buildInputs = [
|
||||
boost
|
||||
zlib
|
||||
openssl
|
||||
R
|
||||
qtbase
|
||||
qtxmlpatterns
|
||||
qtsensors
|
||||
qtwebengine
|
||||
qtwebchannel
|
||||
libuuid
|
||||
libyamlcpp
|
||||
soci
|
||||
postgresql
|
||||
];
|
||||
buildInputs = [
|
||||
boost
|
||||
zlib
|
||||
openssl
|
||||
R
|
||||
libuuid
|
||||
libyamlcpp
|
||||
soci
|
||||
postgresql
|
||||
] ++ (if server then [
|
||||
sqlite.dev
|
||||
pam
|
||||
] else [
|
||||
qtbase
|
||||
qtxmlpatterns
|
||||
qtsensors
|
||||
qtwebengine
|
||||
qtwebchannel
|
||||
]);
|
||||
|
||||
cmakeFlags = [
|
||||
"-DRSTUDIO_TARGET=Desktop"
|
||||
"-DCMAKE_BUILD_TYPE=Release"
|
||||
"-DQT_QMAKE_EXECUTABLE=${qmake}/bin/qmake"
|
||||
"-DRSTUDIO_USE_SYSTEM_SOCI=ON"
|
||||
"-DRSTUDIO_USE_SYSTEM_BOOST=ON"
|
||||
"-DRSTUDIO_USE_SYSTEM_YAML_CPP=ON"
|
||||
"-DPANDOC_VERSION=${pandoc.version}"
|
||||
"-DCMAKE_INSTALL_PREFIX=${placeholder "out"}/lib/rstudio"
|
||||
];
|
||||
cmakeFlags = [
|
||||
"-DRSTUDIO_TARGET=${if server then "Server" else "Desktop"}"
|
||||
"-DCMAKE_BUILD_TYPE=Release"
|
||||
"-DRSTUDIO_USE_SYSTEM_SOCI=ON"
|
||||
"-DRSTUDIO_USE_SYSTEM_BOOST=ON"
|
||||
"-DRSTUDIO_USE_SYSTEM_YAML_CPP=ON"
|
||||
"-DPANDOC_VERSION=${pandoc.version}"
|
||||
"-DCMAKE_INSTALL_PREFIX=${placeholder "out"}/lib/rstudio"
|
||||
] ++ lib.optional (!server) [
|
||||
"-DQT_QMAKE_EXECUTABLE=${qmake}/bin/qmake"
|
||||
];
|
||||
|
||||
# Hack RStudio to only use the input R and provided libclang.
|
||||
patches = [
|
||||
./r-location.patch
|
||||
./clang-location.patch
|
||||
# postFetch doesn't work with this | error: unexpected end-of-file
|
||||
# replacing /usr/bin/node is done in postPatch
|
||||
# https://src.fedoraproject.org/rpms/rstudio/tree/rawhide
|
||||
(fetchpatch {
|
||||
name = "system-node.patch";
|
||||
url = "https://src.fedoraproject.org/rpms/rstudio/raw/5bda2e290c9e72305582f2011040938d3e356906/f/0004-use-system-node.patch";
|
||||
sha256 = "sha256-P1Y07RB/ceFNa749nyBUWSE41eiiZgt43zVcmahvfZM=";
|
||||
})
|
||||
];
|
||||
# Hack RStudio to only use the input R and provided libclang.
|
||||
patches = [
|
||||
./r-location.patch
|
||||
./clang-location.patch
|
||||
# postFetch doesn't work with this | error: unexpected end-of-file
|
||||
# replacing /usr/bin/node is done in postPatch
|
||||
# https://src.fedoraproject.org/rpms/rstudio/tree/rawhide
|
||||
(fetchpatch {
|
||||
name = "system-node.patch";
|
||||
url = "https://src.fedoraproject.org/rpms/rstudio/raw/5bda2e290c9e72305582f2011040938d3e356906/f/0004-use-system-node.patch";
|
||||
sha256 = "sha256-P1Y07RB/ceFNa749nyBUWSE41eiiZgt43zVcmahvfZM=";
|
||||
})
|
||||
];
|
||||
|
||||
postPatch = ''
|
||||
substituteInPlace src/cpp/core/r_util/REnvironmentPosix.cpp --replace '@R@' ${R}
|
||||
postPatch = ''
|
||||
substituteInPlace src/cpp/core/r_util/REnvironmentPosix.cpp --replace '@R@' ${R}
|
||||
|
||||
substituteInPlace src/cpp/CMakeLists.txt \
|
||||
--replace 'SOCI_LIBRARY_DIR "/usr/lib"' 'SOCI_LIBRARY_DIR "${soci}/lib"'
|
||||
substituteInPlace src/cpp/CMakeLists.txt \
|
||||
--replace 'SOCI_LIBRARY_DIR "/usr/lib"' 'SOCI_LIBRARY_DIR "${soci}/lib"'
|
||||
|
||||
substituteInPlace src/gwt/build.xml \
|
||||
--replace '/usr/bin/node' '${nodejs}/bin/node'
|
||||
substituteInPlace src/gwt/build.xml \
|
||||
--replace '/usr/bin/node' '${nodejs}/bin/node'
|
||||
|
||||
substituteInPlace src/cpp/core/libclang/LibClang.cpp \
|
||||
--replace '@libclang@' ${llvmPackages.libclang.lib} \
|
||||
--replace '@libclang.so@' ${llvmPackages.libclang.lib}/lib/libclang.so
|
||||
substituteInPlace src/cpp/core/libclang/LibClang.cpp \
|
||||
--replace '@libclang@' ${llvmPackages.libclang.lib} \
|
||||
--replace '@libclang.so@' ${llvmPackages.libclang.lib}/lib/libclang.so
|
||||
|
||||
substituteInPlace src/cpp/session/include/session/SessionConstants.hpp \
|
||||
--replace "bin/pandoc" "${pandoc}/bin/pandoc"
|
||||
'';
|
||||
substituteInPlace src/cpp/session/include/session/SessionConstants.hpp \
|
||||
--replace "bin/pandoc" "${pandoc}/bin/pandoc"
|
||||
'';
|
||||
|
||||
hunspellDictionaries = with lib; filter isDerivation (unique (attrValues hunspellDicts));
|
||||
# These dicts contain identically-named dict files, so we only keep the
|
||||
# -large versions in case of clashes
|
||||
largeDicts = with lib; filter (d: hasInfix "-large-wordlist" d) hunspellDictionaries;
|
||||
otherDicts = with lib; filter
|
||||
(d: !(hasAttr "dictFileName" d &&
|
||||
elem d.dictFileName (map (d: d.dictFileName) largeDicts)))
|
||||
hunspellDictionaries;
|
||||
dictionaries = largeDicts ++ otherDicts;
|
||||
hunspellDictionaries = with lib; filter isDerivation (unique (attrValues hunspellDicts));
|
||||
# These dicts contain identically-named dict files, so we only keep the
|
||||
# -large versions in case of clashes
|
||||
largeDicts = with lib; filter (d: hasInfix "-large-wordlist" d) hunspellDictionaries;
|
||||
otherDicts = with lib; filter
|
||||
(d: !(hasAttr "dictFileName" d &&
|
||||
elem d.dictFileName (map (d: d.dictFileName) largeDicts)))
|
||||
hunspellDictionaries;
|
||||
dictionaries = largeDicts ++ otherDicts;
|
||||
|
||||
preConfigure = ''
|
||||
mkdir dependencies/dictionaries
|
||||
for dict in ${builtins.concatStringsSep " " dictionaries}; do
|
||||
for i in "$dict/share/hunspell/"*; do
|
||||
ln -s $i dependencies/dictionaries/
|
||||
preConfigure = ''
|
||||
mkdir dependencies/dictionaries
|
||||
for dict in ${builtins.concatStringsSep " " dictionaries}; do
|
||||
for i in "$dict/share/hunspell/"*; do
|
||||
ln -s $i dependencies/dictionaries/
|
||||
done
|
||||
done
|
||||
done
|
||||
|
||||
unzip -q ${mathJaxSrc} -d dependencies/mathjax-27
|
||||
unzip -q ${mathJaxSrc} -d dependencies/mathjax-27
|
||||
|
||||
mkdir -p dependencies/pandoc/${pandoc.version}
|
||||
cp ${pandoc}/bin/pandoc dependencies/pandoc/${pandoc.version}/pandoc
|
||||
mkdir -p dependencies/pandoc/${pandoc.version}
|
||||
cp ${pandoc}/bin/pandoc dependencies/pandoc/${pandoc.version}/pandoc
|
||||
|
||||
cp -r ${rsconnectSrc} dependencies/rsconnect
|
||||
( cd dependencies && ${R}/bin/R CMD build -d --no-build-vignettes rsconnect )
|
||||
cp -r ${rsconnectSrc} dependencies/rsconnect
|
||||
( cd dependencies && ${R}/bin/R CMD build -d --no-build-vignettes rsconnect )
|
||||
|
||||
cp -r "${panmirrorModules}" src/gwt/panmirror/src/editor/node_modules
|
||||
'';
|
||||
cp -r "${panmirrorModules}" src/gwt/panmirror/src/editor/node_modules
|
||||
'';
|
||||
|
||||
postInstall = ''
|
||||
mkdir -p $out/share/icons/hicolor/48x48/apps $out/bin
|
||||
ln $out/lib/rstudio/rstudio.png $out/share/icons/hicolor/48x48/apps
|
||||
postInstall = ''
|
||||
mkdir -p $out/bin $out/share
|
||||
|
||||
for f in {diagnostics,rpostback,rstudio}; do
|
||||
ln -s $out/lib/rstudio/bin/$f $out/bin
|
||||
done
|
||||
${lib.optionalString (!server) ''
|
||||
mkdir -p $out/share/icons/hicolor/48x48/apps
|
||||
ln $out/lib/rstudio/rstudio.png $out/share/icons/hicolor/48x48/apps
|
||||
''}
|
||||
|
||||
for f in .gitignore .Rbuildignore LICENSE README; do
|
||||
find . -name $f -delete
|
||||
done
|
||||
rm -r $out/lib/rstudio/{INSTALL,COPYING,NOTICE,README.md,SOURCE,VERSION}
|
||||
rm -r $out/lib/rstudio/bin/{pandoc/pandoc,pandoc}
|
||||
'';
|
||||
for f in {${if server
|
||||
then "crash-handler-proxy,postback,r-ldpath,rpostback,rserver,rserver-pam,rsession,rstudio-server"
|
||||
else "diagnostics,rpostback,rstudio"}}; do
|
||||
ln -s $out/lib/rstudio/bin/$f $out/bin
|
||||
done
|
||||
|
||||
qtWrapperArgs = [
|
||||
"--suffix PATH : ${lib.makeBinPath [ gnumake ]}"
|
||||
];
|
||||
for f in .gitignore .Rbuildignore LICENSE README; do
|
||||
find . -name $f -delete
|
||||
done
|
||||
rm -r $out/lib/rstudio/{INSTALL,COPYING,NOTICE,README.md,SOURCE,VERSION}
|
||||
rm -r $out/lib/rstudio/bin/{pandoc/pandoc,pandoc}
|
||||
'';
|
||||
|
||||
desktopItems = [
|
||||
(makeDesktopItem {
|
||||
name = "${pname}";
|
||||
exec = "rstudio %F";
|
||||
icon = "rstudio";
|
||||
desktopName = "RStudio";
|
||||
genericName = "IDE";
|
||||
comment = meta.description;
|
||||
categories = "Development;";
|
||||
mimeType = "text/x-r-source;text/x-r;text/x-R;text/x-r-doc;text/x-r-sweave;text/x-r-markdown;text/x-r-html;text/x-r-presentation;application/x-r-data;application/x-r-project;text/x-r-history;text/x-r-profile;text/x-tex;text/x-markdown;text/html;text/css;text/javascript;text/x-chdr;text/x-csrc;text/x-c++hdr;text/x-c++src;";
|
||||
})
|
||||
];
|
||||
meta = with lib; {
|
||||
inherit description;
|
||||
homepage = "https://www.rstudio.com/";
|
||||
license = licenses.agpl3Only;
|
||||
maintainers = with maintainers; [ ciil cfhammill ];
|
||||
platforms = platforms.linux;
|
||||
};
|
||||
|
||||
meta = with lib; {
|
||||
description = "Set of integrated tools for the R language";
|
||||
homepage = "https://www.rstudio.com/";
|
||||
license = licenses.agpl3Only;
|
||||
maintainers = with maintainers; [ ciil ];
|
||||
platforms = platforms.linux;
|
||||
};
|
||||
}
|
||||
passthru = { inherit server; };
|
||||
} // lib.optionalAttrs (!server) {
|
||||
qtWrapperArgs = [
|
||||
"--suffix PATH : ${lib.makeBinPath [ gnumake ]}"
|
||||
];
|
||||
|
||||
desktopItems = [
|
||||
(makeDesktopItem {
|
||||
name = pname;
|
||||
exec = "rstudio %F";
|
||||
icon = "rstudio";
|
||||
desktopName = "RStudio";
|
||||
genericName = "IDE";
|
||||
comment = description;
|
||||
categories = "Development;";
|
||||
mimeType = "text/x-r-source;text/x-r;text/x-R;text/x-r-doc;text/x-r-sweave;text/x-r-markdown;text/x-r-html;text/x-r-presentation;application/x-r-data;application/x-r-project;text/x-r-history;text/x-r-profile;text/x-tex;text/x-markdown;text/html;text/css;text/javascript;text/x-chdr;text/x-csrc;text/x-c++hdr;text/x-c++src;";
|
||||
})
|
||||
];
|
||||
})
|
||||
|
|
|
@ -1,16 +1,23 @@
|
|||
{ lib, runCommand, R, rstudio, wrapQtAppsHook, recommendedPackages, packages, qtbase }:
|
||||
{ lib
|
||||
, runCommand
|
||||
, R
|
||||
, rstudio
|
||||
, makeWrapper
|
||||
, wrapQtAppsHook
|
||||
, recommendedPackages
|
||||
, packages
|
||||
, fontconfig
|
||||
}:
|
||||
|
||||
let
|
||||
qtVersion = with lib.versions; "${major qtbase.version}.${minor qtbase.version}";
|
||||
in
|
||||
runCommand (rstudio.name + "-wrapper") {
|
||||
runCommand (rstudio.name + "-wrapper")
|
||||
{
|
||||
preferLocalBuild = true;
|
||||
allowSubstitutes = false;
|
||||
|
||||
nativeBuildInputs = [wrapQtAppsHook];
|
||||
nativeBuildInputs = [ (if rstudio.server then makeWrapper else wrapQtAppsHook) ];
|
||||
dontWrapQtApps = true;
|
||||
|
||||
buildInputs = [R rstudio] ++ recommendedPackages ++ packages;
|
||||
buildInputs = [ R rstudio ] ++ recommendedPackages ++ packages;
|
||||
|
||||
# rWrapper points R to a specific set of packages by using a wrapper
|
||||
# (as in https://nixos.org/nixpkgs/manual/#r-packages) which sets
|
||||
|
@ -22,14 +29,27 @@ runCommand (rstudio.name + "-wrapper") {
|
|||
# uses R_PROFILE_USER to load this code at startup in RStudio.
|
||||
fixLibsR = "fix_libs.R";
|
||||
}
|
||||
''
|
||||
mkdir $out
|
||||
ln -s ${rstudio}/share $out
|
||||
echo "# Autogenerated by wrapper-rstudio.nix from R_LIBS_SITE" > $out/$fixLibsR
|
||||
echo -n ".libPaths(c(.libPaths(), \"" >> $out/$fixLibsR
|
||||
echo -n $R_LIBS_SITE | sed -e 's/:/", "/g' >> $out/$fixLibsR
|
||||
echo -n "\"))" >> $out/$fixLibsR
|
||||
echo >> $out/$fixLibsR
|
||||
makeQtWrapper ${rstudio}/bin/rstudio $out/bin/rstudio \
|
||||
--set R_PROFILE_USER $out/$fixLibsR
|
||||
''
|
||||
(
|
||||
''
|
||||
mkdir -p $out/bin
|
||||
ln -s ${rstudio}/share $out
|
||||
echo "# Autogenerated by wrapper-rstudio.nix from R_LIBS_SITE" > $out/$fixLibsR
|
||||
echo -n ".libPaths(c(.libPaths(), \"" >> $out/$fixLibsR
|
||||
echo -n $R_LIBS_SITE | sed -e 's/:/", "/g' >> $out/$fixLibsR
|
||||
echo -n "\"))" >> $out/$fixLibsR
|
||||
echo >> $out/$fixLibsR
|
||||
'' +
|
||||
(if
|
||||
rstudio.server then ''
|
||||
makeWrapper ${rstudio}/bin/rsession $out/bin/rsession \
|
||||
--set R_PROFILE_USER $out/$fixLibsR --set FONTCONFIG_FILE ${fontconfig.out}/etc/fonts/fonts.conf
|
||||
|
||||
makeWrapper ${rstudio}/bin/rserver $out/bin/rserver \
|
||||
--add-flags --rsession-path=$out/bin/rsession
|
||||
''
|
||||
else
|
||||
''
|
||||
makeQtWrapper ${rstudio}/bin/rstudio $out/bin/rstudio \
|
||||
--set R_PROFILE_USER $out/$fixLibsR
|
||||
'')
|
||||
)
|
||||
|
|
|
@ -20754,6 +20754,8 @@ with pkgs;
|
|||
packages = [];
|
||||
};
|
||||
|
||||
rstudioServerWrapper = rstudioWrapper.override { rstudio = rstudio-server; };
|
||||
|
||||
rPackages = dontRecurseIntoAttrs (callPackage ../development/r-modules {
|
||||
overrides = (config.rPackageOverrides or (_: {})) pkgs;
|
||||
});
|
||||
|
@ -28384,6 +28386,8 @@ with pkgs;
|
|||
jdk = jdk8;
|
||||
};
|
||||
|
||||
rstudio-server = rstudio.override { server = true; };
|
||||
|
||||
rsync = callPackage ../applications/networking/sync/rsync (config.rsync or {});
|
||||
rrsync = callPackage ../applications/networking/sync/rsync/rrsync.nix {};
|
||||
|
||||
|
|
Loading…
Reference in a new issue