From 5877d8e072d382ec5da6d83219e52df0a90f9f52 Mon Sep 17 00:00:00 2001
From: Luis Pedro Coelho <luis@luispedro.org>
Date: Sun, 24 Jul 2022 17:17:04 +0200
Subject: [PATCH] samtools: Fix cross-compilation

Tests require bgzip which comes from the htslib package.

This did not cause problems prior to
41485e7337baca768dc542c553a9d66030df7b33 as tests were not run in
cross-compilation.
---
 pkgs/applications/science/biology/samtools/default.nix | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/pkgs/applications/science/biology/samtools/default.nix b/pkgs/applications/science/biology/samtools/default.nix
index ec61e0bd7ce..29ba667b055 100644
--- a/pkgs/applications/science/biology/samtools/default.nix
+++ b/pkgs/applications/science/biology/samtools/default.nix
@@ -18,6 +18,9 @@ stdenv.mkDerivation rec {
     })
   ];
 
+  # tests require `bgzip` from the htslib package
+  checkInputs = [ htslib ];
+
   nativeBuildInputs = [ perl ];
 
   buildInputs = [ zlib ncurses htslib ];