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Author SHA1 Message Date
Anderson Torres fc519cb40b calc: refactor meta 2023-04-25 18:17:30 -03:00
Anderson Torres 1ee74c1439 calc: add meta.changelog 2023-04-25 18:17:30 -03:00
Weijia Wang b3962d303c
Merge pull request #227524 from r-ryantm/auto-update/celestia 
celestia: 1.6.2.2 -> 1.6.3
 2023-04-26 00:11:11 +03:00
Ben Darwin 3a39edac80 elmerfem: 9.0 -> unstable-2023-02-03 
vtk_8_withQt5 -> vtkWithQt5
 2023-04-24 21:47:01 -04:00
natsukium 8d40a0ecaa
bedops: fix build on darwin 2023-04-24 22:11:47 +09:00
markuskowa 167d970ba8
Merge pull request #227870 from markuskowa/upd-gromacs 
gromacs: 2023 -> 2023.1
 2023-04-24 11:33:16 +02:00
markuskowa 7677c610e1
Merge pull request #227874 from markuskowa/upd-octopus 
octopus: 12.1 -> 12.2
 2023-04-24 10:48:49 +02:00
Nick Cao ab7c128e3c
Merge pull request #227207 from natsukium/kent/update 
kent: 404 -> 446
 2023-04-24 10:03:16 +08:00
Sandro 9bc9cfe51d
Merge pull request #222660 from natsukium/hh-suite/init 2023-04-23 23:42:38 +02:00
Markus Kowalewski 94add42651
octopus: 12.1 -> 12.2 2023-04-23 21:53:05 +02:00
Markus Kowalewski 6cc2ab022a
gromacs: 2023 -> 2023.1 2023-04-23 21:36:32 +02:00
R. Ryantm 8af51c3628 workcraft: 3.3.9 -> 3.4.0 2023-04-23 00:06:26 +00:00
Nick Cao 99c4e7b895
Merge pull request #227170 from jbedo/subread 
subread: 2.0.4 -> 2.0.5
 2023-04-22 11:05:37 +08:00
R. Ryantm 3a14846ec7 celestia: 1.6.2.2 -> 1.6.3 2023-04-22 00:23:56 +00:00
Robert Schütz 2362848adf truvari: add natsukium to maintainers 2023-04-21 13:43:26 -07:00
Robert Schütz ea468d9691 truvari: 2.1.1 -> 4.0.0 
Diff: https://github.com/spiralgenetics/truvari/compare/v2.1.1...v4.0.0
 2023-04-21 13:43:26 -07:00
Weijia Wang 34880cf0dc
Merge pull request #227313 from r-ryantm/auto-update/jags 
jags: 4.3.1 -> 4.3.2
 2023-04-21 21:37:51 +03:00
Weijia Wang 482e796513
Merge pull request #227292 from r-ryantm/auto-update/tlaplus 
tlaplus: 1.7.2 -> 1.7.3
 2023-04-21 00:07:16 +03:00
Weijia Wang 7026ff1bd9
Merge pull request #226579 from r-ryantm/auto-update/gtkwave 
gtkwave: 3.3.114 -> 3.3.115
 2023-04-20 21:54:13 +03:00
R. Ryantm 98a12d5f89 jags: 4.3.1 -> 4.3.2 2023-04-20 18:41:59 +00:00
R. Ryantm 3012b98a08 tlaplus: 1.7.2 -> 1.7.3 2023-04-20 15:51:31 +00:00
Felix Schröter 1843807ba3
sad: remove old, unmaintained package 
The package isn't maintained and hasn't been exposed for a while.
Meanwhile there's been added a new package with the same name.
This change doesn't touch the new package.
 2023-04-20 11:26:01 +02:00
Weijia Wang 7ea26cf753
Merge pull request #227027 from wegank/lablgl-fix 
ocamlPackages.lablgl: unbreak on darwin
 2023-04-20 10:17:15 +03:00
natsukium 23205d28d2
kent: add missing information to the meta 2023-04-20 16:06:09 +09:00
natsukium 5b62152599
kent: add runHooks 2023-04-20 16:06:08 +09:00
natsukium 1e68ff3ee9
kent: 404 -> 446 
https://github.com/ucscGenomeBrowser/kent/compare/v404_base...v446_base
 2023-04-20 16:05:44 +09:00
Weijia Wang 17148b8f7d
Merge pull request #226929 from cransom/pcb2gcode-darwin 
pcb2gcode: fix build on darwin
 2023-04-20 09:53:22 +03:00
Nick Cao e6a95d9628
Merge pull request #227036 from natsukium/tandem-aligner/v0.1 
tandem-aligner: unstable-2022-09-17 -> 0.1
 2023-04-20 09:17:52 +08:00
Casey Ransom 3ed1e3b268 pcb2gcode: fix build on darwin 
This version bumps gerbv as well.
 2023-04-19 21:15:54 -04:00
Justin Bedo 718170ed41
subread: 2.0.4 -> 2.0.5 2023-04-20 10:25:20 +10:00
Robert Scott d32a852d2a
Merge pull request #226329 from risicle/ris-streamlit-1.21.0 
streamlit: 1.18.1 -> 1.21.0
 2023-04-19 18:12:10 +01:00
Dmitry Kalinkin cafa2f02fb
root: enable root7 (#226351) 2023-04-19 10:28:26 -04:00
natsukium e201b1556f
tandem-aligner: add changelog to meta 2023-04-19 21:23:21 +09:00
natsukium 14d7a73714
tandem-aligner: unstable-2022-09-17 -> 0.1 
https://github.com/seryrzu/tandem_aligner/releases/tag/v0.1
 2023-04-19 21:22:18 +09:00
Weijia Wang c2c0c070cf glsurf: update platforms 2023-04-19 12:01:16 +03:00
natsukium a272606614
hh-suite: init at 3.3.0 2023-04-19 10:32:35 +09:00
Artturi 9a1f5d4248
Merge pull request #226889 from Artturin/fixlints2 2023-04-18 21:52:21 +03:00
Artturin eac28f38d6 treewide: fix lints 
Arg to lib.optional is a list

build time tool in buildInputs

*Flags not a list

https://github.com/nix-community/nixpkgs-lint
 2023-04-18 20:20:56 +03:00
7c6f434c 0a187c56e3
Merge pull request #226628 from natsukium/jmol/update 
jmol: 16.1.3 -> 16.1.9
 2023-04-18 15:29:43 +00:00
Sandro 555daa9d33
Merge pull request #221957 from natsukium/dssp/update 
dssp: 4.0.5 -> 4.2.2.1
 2023-04-18 16:34:17 +02:00
Sandro db3d1dbe79
Merge pull request #226042 from collares/ipywidgets805 
python3Packages.ipywidgets: 8.0.4 -> 8.0.6
 2023-04-18 16:25:27 +02:00
Doron Behar 0c57b3ac86
Merge pull request #226645 from alyaeanyx/qalculate-4.6.1 
libqalculate, qalculate-gtk, qalculate-qt: 4.6.0 -> 4.6.1
 2023-04-17 09:36:08 -07:00
Thomas Tuegel ccf7156d8d
Merge pull request #217974 from pxrl/pxrl/z3 
z3: 4.8.15 -> 4.8.17
 2023-04-17 10:03:07 -05:00
alyaeanyx 834c6bf777 libqalculate, qalculate-gtk, qalculate-qt: 4.6.0 -> 4.6.1 2023-04-17 15:42:23 +02:00
Nick Cao e94b6203c9
Merge pull request #226546 from returntoreality/kstars-update 
kstars: 3.6.3 -> 3.6.4
 2023-04-17 19:47:39 +08:00
natsukium 23e78ca2fc
jmol: 16.1.3 -> 16.1.9 2023-04-17 17:53:08 +09:00
R. Ryantm c806a5c121 gtkwave: 3.3.114 -> 3.3.115 2023-04-17 03:29:10 +00:00
Weijia Wang 9e47fc8658
Merge pull request #226455 from wegank/nvc-bump 
nvc: 1.9.0 -> 1.9.1
 2023-04-16 19:01:18 +03:00
R. Ryantm f30febf830 form: 4.3.0 -> 4.3.1 2023-04-16 11:18:22 -04:00
Weijia Wang 4825f97fce nvc: 1.9.0 -> 1.9.1 2023-04-16 15:11:11 +03:00
Atemu 445ef28548
Merge pull request #225748 from Atemu/buildFHSEnvBubblewrap-by-default 
buildFHSEnv: use bubblewrap by default
 2023-04-16 13:03:36 +02:00
Atemu f63a12f296 tree-wide: buildFHSUserEnv -> buildFHSEnv 2023-04-16 10:15:13 +02:00
Bobby Rong 2abbfae038
Merge pull request #226353 from kindrowboat/fix-nasc 
nasc: fix compile failure
 2023-04-16 09:40:48 +08:00
Stef Dunlap 79c4e8aaa8 nasc: fix compile failure 
Fix inspired by AUR patch: https://aur.archlinux.org/packages/nasc#comment-879822
 2023-04-15 17:18:12 -04:00
Weijia Wang ea734f4e9a
Merge pull request #224357 from wegank/sasview-fix 
sasview: fix build
 2023-04-15 20:35:49 +03:00
Evils cce076bd24 kicad-unstable: 2023-03-29 -> 2023-04-14 
workaround for upstream issue 14346 no longer needed
 2023-04-15 12:32:23 +02:00
Evils 534f790a75 kicad: 7.0.1 -> 7.0.2 2023-04-15 12:32:23 +02:00
Robert Scott a604287fbe streamlit: 1.18.1 -> 1.21.0 2023-04-15 11:23:01 +01:00
Nick Cao 25e21b34a9
Merge pull request #226208 from panicgh/dataexplorer 
dataexplorer: 3.7.4 -> 3.7.6
 2023-04-15 11:30:56 +08:00
Weijia Wang b5eaa9ffd9 stellarium: update darwin patches 2023-04-15 03:10:34 +03:00
Nicolas Benes 1f8eeba04f dataexplorer: 3.7.4 -> 3.7.6 2023-04-15 00:47:26 +02:00
natsukium 62943901dd
dssp: 4.0.5 -> 4.2.2.1 
https://github.com/PDB-REDO/dssp/compare/v4.0.5...v4.2.2.1
 2023-04-14 11:35:48 +09:00
Mauricio Collares 058dc0f6df sage: replace ipywidgets workaround by update patches 2023-04-13 22:15:27 +02:00
7c6f434c 8f8acb2140
Merge pull request #225723 from r-ryantm/auto-update/opensmt 
opensmt: 2.4.3 -> 2.5.0
 2023-04-13 08:54:55 +00:00
Nick Cao 2833fc3981
Merge pull request #225841 from natsukium/mafft/update 
mafft: 7.515 -> 7.520
 2023-04-13 09:15:12 +08:00
Robert Scott 2107f7de60
Merge pull request #225865 from bzizou/samtools 
samtools: 1.13 -> 1.17
 2023-04-13 00:10:42 +01:00
Bruno Bzeznik d69d242b7b Samtools: 1.13 -> 1.17 
Changelogs:
 - https://github.com/samtools/samtools/releases/tag/1.14
 - https://github.com/samtools/samtools/releases/tag/1.15
 - https://github.com/samtools/samtools/releases/tag/1.15.1
 - https://github.com/samtools/samtools/releases/tag/1.16
 - https://github.com/samtools/samtools/releases/tag/1.16.1
 - https://github.com/samtools/samtools/releases/tag/1.17
 2023-04-12 12:00:25 +02:00
Sandro b0989ca61b
Merge pull request #222632 from panicgh/spdlog-upd 
tiledb: 2.3.3 -> 2.8.3, spdlog: 1.10.0 -> 1.11.0, spdlog_0: remove
 2023-04-12 10:57:23 +02:00
natsukium f962206f94
mafft: 7.515 -> 7.520 
https://gitlab.com/sysimm/mafft/-/tags/v7.520
 2023-04-12 13:28:24 +09:00
Nick Cao 47f3cca66d
Merge pull request #225265 from NickCao/eigenmath 
eigenmath: unstable-2023-03-05 -> unstable-2023-04-07
 2023-04-12 11:45:15 +08:00
R. Ryantm 2ed32c48a5 primecount: 7.7 -> 7.8 2023-04-11 15:08:24 -03:00
R. Ryantm 84dbda044f opensmt: 2.4.3 -> 2.5.0 2023-04-11 10:26:10 +00:00
Sandro 23e55a367e
Merge pull request #223068 from MarcFontaine/master 2023-04-10 21:52:29 +02:00
Weijia Wang 282c22a4d2 nvc: 1.8.2 -> 1.9.0 2023-04-10 13:34:15 +03:00
Dmitry Kalinkin df3bf8ff76
Merge pull request #218331 from xworld21/texlive-new-dependency-resolution 
texlive.combine: move dependencies to attribute tlDeps, resolve them …
 2023-04-09 23:59:45 -04:00
Sandro 08d2ac8dbc
Merge pull request #186127 from ShamrockLee/raspa2 2023-04-09 18:42:37 +02:00
Linus Karl e7997ece6e kstars: 3.6.3 -> 3.6.4 
Changelog: 85dfd8fb6e/ChangeLog
 2023-04-08 22:03:04 +02:00
Nick Cao 027d18d6a7
eigenmath: enable tests 2023-04-08 23:19:59 +08:00
Nick Cao 16d7f06261
eigenmath: unstable-2023-03-05 -> unstable-2023-04-07 2023-04-08 15:00:16 +08:00
Nick Cao 6c38c33f01
eigenmath: add updateScript 2023-04-08 14:58:35 +08:00
github-actions[bot] ee14a276ab
Merge master into haskell-updates 2023-04-07 00:11:54 +00:00
Justin Bedő 642ee2373c
Merge pull request #224827 from r-ryantm/auto-update/varscan 
varscan: 2.4.5 -> 2.4.6
 2023-04-06 22:51:16 +10:00
Nicolas Benes 3e886954ee spdlog: 1.10.0 -> 1.11.0 
Unpin from fmt_8.
 2023-04-06 07:25:19 +02:00
github-actions[bot] 6a7b8348a1
Merge master into haskell-updates 2023-04-06 00:11:55 +00:00
Sandro 5ea854454e
Merge pull request #224359 from hesiod/coin-utils 2023-04-06 01:08:07 +02:00
R. Ryantm 8fcdc3f62c varscan: 2.4.5 -> 2.4.6 2023-04-05 14:55:31 +00:00
Ellie Hermaszewska bd54a9047d
tamarin-prover: Allow compiling with maude-3.3 2023-04-05 14:39:55 +08:00
Ryan Lahfa ce35e61c3c
Merge pull request #221099 from evils/kicad 
kicad(-unstable): bump to latest version, cleanup and fixes
 2023-04-04 13:28:26 +02:00
Shamrock Lee 4e72d111e9 raspa: init at 2.0.47 and add tests 2023-04-03 20:53:23 +08:00
Weijia Wang 64a5b00d02
Merge pull request #224462 from wegank/scalp-mirror 
scalp: update mirror link
 2023-04-03 14:48:41 +03:00
Weijia Wang 4ad85a5c10 scalp: update mirror link 2023-04-03 14:16:03 +03:00
Tobias Markus eae9398010 clp: Change license to epl20 2023-04-03 12:57:50 +02:00
Weijia Wang 150dcd7ce7
Merge pull request #224345 from natsukium/blast/darwin 
blast-bin: init at 2.13.0
 2023-04-03 09:59:08 +03:00
natsukium cddb4a24ba
blast-bin: init at 2.13.0 2023-04-03 12:39:17 +09:00
Nick Cao 7613d23e78
Merge pull request #224414 from jbedo/last 
last: 1447 -> 1453
 2023-04-03 09:43:13 +08:00
Justin Bedo e739dc5088
last: 1447 -> 1453 2023-04-03 08:38:27 +10:00
Vincenzo Mantova acb02e2fab eukleides: move texlive dependencies to tlDeps 2023-04-02 13:00:52 +01:00
Tobias Markus 1718fc0b04 clp: 1.17.6 -> 1.17.7 2023-04-02 14:00:47 +02:00
Weijia Wang 4213fc7cde sasview: fix build 2023-04-02 15:00:07 +03:00
Vincenzo Mantova 6b2b9a0de3 eukleides: create pkgs fixpoint for texlive using mkDerivation 2023-04-02 12:58:47 +01:00
Nicolas Benes c59f6c75b6 openroad: unstable-2022-07-19 -> unstable-2023-03-31 2023-04-02 05:44:19 +02:00
natsukium 5ac95120d5
pymol: remove broken mark for darwin 
The bug has been resolved by changing the backend to Qt
in this commit, ab3f0771a4.
 2023-04-01 20:41:01 +09:00
Michal Sojka b1cb42d3b7 cppzmq: make zeromq propagatedBuildInput 
cppzmq is a header-only library. As such, it is not much useful
without zeromq, whose headers it includes. By having zeromq in
propagatedBuildInputs, we can simplify dependent expressions.

This change is motivated by
https://github.com/lopsided98/nix-ros-overlay/issues/255#issuecomment-1487590226.
The expressions in nix-ros-overlay are automatically generated and
since packages in other distributions where ROS runs need not to
explicitly depend on zeromq, the Nix expression should behave the
same. This way, nix-ros-overlay will not to have manually
patch/overlay the automatically generated expressions.
 2023-03-31 18:58:56 +02:00
Evils 23849267ee kicad-unstable: fix ngspice tests 2023-03-30 18:53:53 +02:00
MarcFontaine 2cfc128ca3
nanovna-saver: 0.5.4 -> 0.6.0 2023-03-30 10:58:55 +02:00
Evils 4f0de9463a kicad-unstable: 2023-02-14 -> 2023-03-29 
includes a fix for upstream issue 14346
  (attempting to installing pcbnew.py outside of $out)
 2023-03-30 09:22:08 +02:00
Nick Cao 2f73fede2a
calcmysky: unstable-2023-02-11 -> 0.3.0 
Diff: c5f2814528...v0.3.0
 2023-03-29 19:29:46 +08:00
Weijia Wang 626401c783
Merge pull request #220832 from wegank/glucose-bump 
glucose: 4.1 -> 4.2.1
 2023-03-29 09:13:21 +03:00
Weijia Wang 396b3b7271
Merge pull request #223075 from r-ryantm/auto-update/ginac 
ginac: 1.8.5 -> 1.8.6
 2023-03-29 00:27:26 +03:00
Mauricio Collares a4f8bf2248
Merge pull request #223497 from r-ryantm/auto-update/primecount 
primecount: 7.6 -> 7.7
 2023-03-28 20:28:02 +02:00
Evils 7f3a08710a kicad: add requests runtime dependency 
required for some of the plugins
 2023-03-28 18:57:29 +02:00
Evils d8020e1e17 kicad: remove withOCC and more cmakeFlags cleanup 
OCC is no longer optional
RPATH apparently no longer contains references to /build/
KICAD_SCRIPTING_WXPYTHON is ON by default

sort some of the options a bit

and remove stray lndir
 2023-03-28 18:57:29 +02:00
Evils 788df5456b kicad: 7.0.0 -> 7.0.1 
remove now integrated patches
 2023-03-28 18:57:29 +02:00
Weijia Wang eac1ecb55a
Merge pull request #222531 from r-ryantm/auto-update/sumo 
sumo: 1.15.0 -> 1.16.0
 2023-03-28 16:47:07 +03:00
Nick Cao 98f3b08f58
Merge pull request #223453 from kilianar/stellarium-23.1 
stellarium: 1.2 -> 23.1
 2023-03-28 18:29:13 +08:00
Ali Caglayan 8fe1ea496b coq: 8.16.1 -> 8.17.0 
Signed-off-by: Ali Caglayan <alizter@gmail.com>
 2023-03-28 08:13:12 +02:00
R. Ryantm 3b3cc65701 primecount: 7.6 -> 7.7 2023-03-28 04:37:03 +00:00
kilianar d19f5dedec stellarium: 1.2 -> 23.1 
https://github.com/Stellarium/stellarium/releases/tag/v23.1

Mitigates https://github.com/advisories/GHSA-7vmm-m8vp-g5h3
 2023-03-28 00:22:36 +02:00
kilianar 733e7c52c2 calcmysky: 0.2.1 -> unstable-203-02-11 2023-03-28 00:03:32 +02:00
Weijia Wang c9d051b17d
Merge pull request #222979 from r-ryantm/auto-update/cvc5 
cvc5: 1.0.4 -> 1.0.5
 2023-03-27 09:36:32 +03:00
Sandro c2ef479b62
Merge pull request #168773 from Leixb/megam-add-opt 2023-03-27 00:59:44 +02:00
Justin Bedő c39e3d9b74
Merge pull request #221546 from NixOS/r-updates 
R: 4.2.2 -> 4.2.3
 2023-03-26 21:40:30 +00:00
github-actions[bot] 07fb9cae4e
Merge master into staging-next 2023-03-26 00:02:45 +00:00
Artturi b213126ec0
Merge pull request #222766 from Artturin/fix-different-store 2023-03-25 22:17:07 +02:00
R. Ryantm 2cb2ee9630 ginac: 1.8.5 -> 1.8.6 2023-03-25 14:10:42 +00:00
R. Ryantm bb270775f2 cvc5: 1.0.4 -> 1.0.5 2023-03-25 01:00:12 +00:00
github-actions[bot] cead7e3e73
Merge master into staging-next 2023-03-25 00:02:20 +00:00
Weijia Wang 2ce97f2bf9
Merge pull request #222464 from r-ryantm/auto-update/diamond 
diamond: 2.1.5 -> 2.1.6
 2023-03-24 20:56:17 +02:00
Artturin 780669daf5 treewide: don't hardcode /nix/store (no rebuilds changes) 
improve experience for other store locations
 2023-03-24 20:11:33 +02:00
github-actions[bot] adec6862c5
Merge master into staging-next 2023-03-24 18:01:06 +00:00
LeixB d443805fe3
megam: add leixb as maintainer 2023-03-24 18:52:48 +01:00
LeixB d85fae35d9
megam: add megam.opt binary 
- Add megam.opt (optimized native binary)
 2023-03-24 18:52:14 +01:00
Vladimír Čunát 1f1c1739d7
Merge #222442: R: override test for curl version 
...into staging-next
 2023-03-23 11:07:36 +01:00
R. Ryantm d2bf9653de gretl: 2022c -> 2023a 2023-03-23 06:03:08 +00:00
github-actions[bot] 85f7b5276e
Merge master into staging-next 2023-03-22 18:01:11 +00:00
Luflosi ddb714f68d
yices: fix typo in comment 2023-03-22 16:08:09 +01:00
Weijia Wang 120a484726
Merge pull request #220001 from wegank/isabelle-arm 
isabelle: add aarch64-linux support
 2023-03-22 16:15:34 +02:00
R. Ryantm 91c2c00aad sumo: 1.15.0 -> 1.16.0 2023-03-22 12:07:12 +00:00
github-actions[bot] 0537539006
Merge master into staging-next 2023-03-22 12:01:22 +00:00
Nick Cao 6c4095e7af
Merge pull request #222331 from r-ryantm/auto-update/seqkit 
seqkit: 2.3.1 -> 2.4.0
 2023-03-22 16:08:39 +08:00
R. Ryantm 4c2324cf14 diamond: 2.1.5 -> 2.1.6 2023-03-22 03:09:40 +00:00
MaxHearnden bfbc0f56e5 override test for curl version 2023-03-21 22:50:14 +00:00
Vincent Laporte 48774c43cd
acgtk: use Dune 3 2023-03-21 13:05:53 +01:00
R. Ryantm a6f33bd62f seqkit: 2.3.1 -> 2.4.0 2023-03-21 10:45:22 +00:00
R. Ryantm 4da1bc0bfa marvin: 22.13.0 -> 23.4.0 2023-03-21 07:22:28 +00:00
github-actions[bot] bb48723d63
Merge master into staging-next 2023-03-21 00:02:39 +00:00
Vincent Laporte e12230e716
why3: 1.5.1 → 1.6.0; ocamlPackages.lambdapi: 2.2.1 → 2.3.1 (#220986) 
why3: 1.5.1 → 1.6.0
ocamlPackages.lambdapi: 2.2.1 → 2.3.1

Co-authored-by: Weijia Wang <9713184+wegank@users.noreply.github.com>
 2023-03-20 20:45:47 +01:00
Martin Weinelt 9959ec97f8
Merge remote-tracking branch 'origin/master' into staging-next 
Conflicts:
- pkgs/development/python-modules/wxPython/4.0.nix
- pkgs/development/python-modules/wxPython/4.1.nix
 2023-03-20 15:07:36 +01:00
Weijia Wang 802b7ac3e7
Merge pull request #221743 from r-ryantm/auto-update/gatk 
gatk: 4.3.0.0 -> 4.4.0.0
 2023-03-20 14:33:37 +02:00
github-actions[bot] 96f7385465
Merge master into staging-next 2023-03-20 00:02:29 +00:00
Mauricio Collares bd3de7859d
Merge pull request #221718 from wegank/sage-fix 
sage: add libpng to sagelib, import package update patches
 2023-03-19 19:31:02 +01:00
github-actions[bot] 84c97a9e91
Merge master into staging-next 2023-03-19 18:00:59 +00:00
Weijia Wang 2572ddc706
Merge pull request #221977 from wegank/mavproxy-wx 
mavproxy: migrate to wxPython_4_2
 2023-03-19 20:00:39 +02:00
Weijia Wang a1e27cf0e9 sage: add libpng to sagelib 2023-03-19 19:33:36 +02:00
Mauricio Collares c13d98c7bf sage: import python package upgrade fixes 2023-03-19 19:32:56 +02:00
natsukium 21affa5ff1
trf: init at 4.09.1 2023-03-19 22:25:42 +09:00
Weijia Wang 4fe9738427 mavproxy: migrate to wxPython_4_2 2023-03-19 10:29:51 +02:00
github-actions[bot] c70342c89c
Merge master into staging-next 2023-03-19 00:02:27 +00:00
Weijia Wang 7574e25ef3
Merge pull request #221864 from natsukium/mafft/update 
mafft: 7.508 -> 7.515
 2023-03-19 00:03:19 +02:00
Weijia Wang 8da8071e37 glucose: 4.1 -> 4.2.1 2023-03-18 22:17:16 +02:00
github-actions[bot] 403b148aa5
Merge master into staging-next 2023-03-18 18:01:02 +00:00
Weijia Wang 0ddc01c569 glucose: refactor 2023-03-18 19:00:45 +02:00
natsukium f3b75ef3ce
mafft: 7.508 -> 7.515 2023-03-19 00:42:29 +09:00
Weijia Wang f15cf7e6af
Merge pull request #221809 from wegank/nest-bump 
nest: 3.3 -> 3.4
 2023-03-18 17:17:18 +02:00
github-actions[bot] a912b83051
Merge master into staging-next 2023-03-18 12:01:30 +00:00
Weijia Wang b45fe715d9
Merge pull request #217922 from r-ryantm/auto-update/openboardview 
openboardview: 9.0.3 -> 9.95.0
 2023-03-18 13:00:52 +02:00
Fabian Affolter 109f8ccdfe
nest: specify license 2023-03-18 11:23:52 +01:00
Fabian Affolter c7ec291235
nest: add changelog to meta 2023-03-18 11:23:06 +01:00
Weijia Wang ea847dd1a0 nest: 3.3 -> 3.4 2023-03-18 12:13:46 +02:00
R. Ryantm 0d44f838ca gatk: 4.3.0.0 -> 4.4.0.0 2023-03-18 01:10:14 +00:00
K900 a5a292c7a8 treewide: clear out remaining qt5 conditionals 2023-03-18 02:10:20 +03:00
github-actions[bot] d761f69867
Merge master into staging-next 2023-03-17 17:57:00 +00:00
Markus Kowalewski 545b5d04f4
openmolcas: 22.10 -> 23.02 2023-03-17 13:33:41 +01:00
github-actions[bot] 2394986204
Merge master into staging-next 2023-03-17 12:01:17 +00:00
Weijia Wang 9c8a92bcde
Merge pull request #205310 from r-ryantm/auto-update/sumo 
sumo: 1.9.2 -> 1.15.0
 2023-03-17 12:56:48 +02:00
github-actions[bot] f5629a4518
Merge master into staging-next 2023-03-17 06:01:16 +00:00
Weijia Wang 854414836c
Merge pull request #221529 from wegank/qalculate-qt-darwin 
qalculate-qt: add darwin support
 2023-03-17 07:47:56 +02:00
Justin Bedő bf32c70253
Merge pull request #221559 from r-ryantm/auto-update/subread 
subread: 2.0.3 -> 2.0.4
 2023-03-17 01:57:57 +00:00
github-actions[bot] 6746017444
Merge master into staging-next 2023-03-17 00:02:33 +00:00
R. Ryantm 2a35b86739 subread: 2.0.3 -> 2.0.4 2023-03-16 23:09:44 +00:00
markuskowa 0fea9287f4
Merge pull request #221301 from sheepforce/plumed 
plumed: init at 2.8.2
 2023-03-16 20:43:54 +01:00
Weijia Wang 5c214fb163 qalculate-qt: add darwin support 2023-03-16 21:31:51 +02:00
github-actions[bot] 455127ad5e
Merge master into staging-next 2023-03-16 18:01:20 +00:00
Weijia Wang 183c970c9a
Merge pull request #221403 from r-ryantm/auto-update/gama 
gama: 2.23 -> 2.24
 2023-03-16 18:03:12 +02:00
Weijia Wang de6210e074
Merge pull request #217539 from GenericNerdyUsername/horizon-occ 
horizon-eda: switch from OCE to OCC
 2023-03-16 17:20:47 +02:00
Bernardo Meurer 6e55733359
Merge pull request #219747 from Stunkymonkey/deprecate-isNull 2023-03-16 11:10:22 -03:00
Phillip Seeber 09b52c631a cp2k: enable plumed plugin 
cp2k: enable plumed plugin


cp2k: use mpicxx to figure out link lines
 2023-03-16 14:30:27 +01:00
github-actions[bot] 80a0ae17b5
Merge master into staging-next 2023-03-16 12:01:29 +00:00
Vladimír Čunát 0f9354bfee
Merge #218309: ffmpeg: ffmpeg_4 → ffmpeg_5 
...into staging
 2023-03-16 11:11:31 +01:00
Weijia Wang b3e468975f
Merge pull request #221402 from r-ryantm/auto-update/uarmsolver 
uarmsolver: 0.2.4 -> 0.2.5
 2023-03-16 09:09:24 +02:00
R. Ryantm 166bed2b29 gama: 2.23 -> 2.24 2023-03-16 00:43:50 +00:00
R. Ryantm 139df052d5 uarmsolver: 0.2.4 -> 0.2.5 2023-03-16 00:42:06 +00:00
github-actions[bot] a8ddab03b5
Merge staging-next into staging 2023-03-16 00:03:10 +00:00
Weijia Wang b8aec5ff2d
Merge pull request #221107 from r-ryantm/auto-update/openhantek6022 
openhantek6022: 3.3.2.1 -> 3.3.2.2
 2023-03-15 22:09:12 +02:00
Martin Weinelt 19680e9902
Merge pull request #217568 from trofi/stdenv-parallel-install 
stdenv/generic/setup.sh: enable parallel installs for parallel builds
 2023-03-15 17:10:19 +00:00
Justin Bedo 5eff9f1940
R: 4.2.2 -> 4.2.3 2023-03-15 22:51:17 +11:00
Martin Weinelt 9e4d592114
Merge remote-tracking branch 'origin/master' into staging-next 
Conflicts:
- pkgs/development/python-modules/eve/default.nix
 2023-03-14 16:49:37 +01:00
Weijia Wang 6bade5f7df tamarin-prover: only use glibcLocales on linux 2023-03-14 15:55:12 +02:00
Philipp Middendorf f43390024c crystfel: more review fixes 2023-03-14 08:36:38 +01:00
Martin Weinelt 6b67186fe9
Merge remote-tracking branch 'origin/master' into staging-next 
Conflicts:
- pkgs/development/python-modules/crownstone-cloud/default.nix
- pkgs/development/python-modules/exrex/default.nix
- pkgs/development/python-modules/mkdocs-minify/default.nix
- pkgs/development/python-modules/myjwt/default.nix
- pkgs/development/tools/analysis/checkov/default.nix
 2023-03-14 08:14:26 +01:00