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Author SHA1 Message Date
Atemu 445ef28548
Merge pull request #225748 from Atemu/buildFHSEnvBubblewrap-by-default 
buildFHSEnv: use bubblewrap by default
 2023-04-16 13:03:36 +02:00
Atemu f63a12f296 tree-wide: buildFHSUserEnv -> buildFHSEnv 2023-04-16 10:15:13 +02:00
Bobby Rong 2abbfae038
Merge pull request #226353 from kindrowboat/fix-nasc 
nasc: fix compile failure
 2023-04-16 09:40:48 +08:00
Stef Dunlap 79c4e8aaa8 nasc: fix compile failure 
Fix inspired by AUR patch: https://aur.archlinux.org/packages/nasc#comment-879822
 2023-04-15 17:18:12 -04:00
Weijia Wang ea734f4e9a
Merge pull request #224357 from wegank/sasview-fix 
sasview: fix build
 2023-04-15 20:35:49 +03:00
Evils cce076bd24 kicad-unstable: 2023-03-29 -> 2023-04-14 
workaround for upstream issue 14346 no longer needed
 2023-04-15 12:32:23 +02:00
Evils 534f790a75 kicad: 7.0.1 -> 7.0.2 2023-04-15 12:32:23 +02:00
Robert Scott a604287fbe streamlit: 1.18.1 -> 1.21.0 2023-04-15 11:23:01 +01:00
Nick Cao 25e21b34a9
Merge pull request #226208 from panicgh/dataexplorer 
dataexplorer: 3.7.4 -> 3.7.6
 2023-04-15 11:30:56 +08:00
Weijia Wang b5eaa9ffd9 stellarium: update darwin patches 2023-04-15 03:10:34 +03:00
Nicolas Benes 1f8eeba04f dataexplorer: 3.7.4 -> 3.7.6 2023-04-15 00:47:26 +02:00
natsukium 62943901dd
dssp: 4.0.5 -> 4.2.2.1 
https://github.com/PDB-REDO/dssp/compare/v4.0.5...v4.2.2.1
 2023-04-14 11:35:48 +09:00
Mauricio Collares 058dc0f6df sage: replace ipywidgets workaround by update patches 2023-04-13 22:15:27 +02:00
7c6f434c 8f8acb2140
Merge pull request #225723 from r-ryantm/auto-update/opensmt 
opensmt: 2.4.3 -> 2.5.0
 2023-04-13 08:54:55 +00:00
Nick Cao 2833fc3981
Merge pull request #225841 from natsukium/mafft/update 
mafft: 7.515 -> 7.520
 2023-04-13 09:15:12 +08:00
Robert Scott 2107f7de60
Merge pull request #225865 from bzizou/samtools 
samtools: 1.13 -> 1.17
 2023-04-13 00:10:42 +01:00
Bruno Bzeznik d69d242b7b Samtools: 1.13 -> 1.17 
Changelogs:
 - https://github.com/samtools/samtools/releases/tag/1.14
 - https://github.com/samtools/samtools/releases/tag/1.15
 - https://github.com/samtools/samtools/releases/tag/1.15.1
 - https://github.com/samtools/samtools/releases/tag/1.16
 - https://github.com/samtools/samtools/releases/tag/1.16.1
 - https://github.com/samtools/samtools/releases/tag/1.17
 2023-04-12 12:00:25 +02:00
Sandro b0989ca61b
Merge pull request #222632 from panicgh/spdlog-upd 
tiledb: 2.3.3 -> 2.8.3, spdlog: 1.10.0 -> 1.11.0, spdlog_0: remove
 2023-04-12 10:57:23 +02:00
natsukium f962206f94
mafft: 7.515 -> 7.520 
https://gitlab.com/sysimm/mafft/-/tags/v7.520
 2023-04-12 13:28:24 +09:00
Nick Cao 47f3cca66d
Merge pull request #225265 from NickCao/eigenmath 
eigenmath: unstable-2023-03-05 -> unstable-2023-04-07
 2023-04-12 11:45:15 +08:00
R. Ryantm 2ed32c48a5 primecount: 7.7 -> 7.8 2023-04-11 15:08:24 -03:00
R. Ryantm 84dbda044f opensmt: 2.4.3 -> 2.5.0 2023-04-11 10:26:10 +00:00
Sandro 23e55a367e
Merge pull request #223068 from MarcFontaine/master 2023-04-10 21:52:29 +02:00
Weijia Wang 282c22a4d2 nvc: 1.8.2 -> 1.9.0 2023-04-10 13:34:15 +03:00
Dmitry Kalinkin df3bf8ff76
Merge pull request #218331 from xworld21/texlive-new-dependency-resolution 
texlive.combine: move dependencies to attribute tlDeps, resolve them …
 2023-04-09 23:59:45 -04:00
Sandro 08d2ac8dbc
Merge pull request #186127 from ShamrockLee/raspa2 2023-04-09 18:42:37 +02:00
Linus Karl e7997ece6e kstars: 3.6.3 -> 3.6.4 
Changelog: 85dfd8fb6e/ChangeLog
 2023-04-08 22:03:04 +02:00
Nick Cao 027d18d6a7
eigenmath: enable tests 2023-04-08 23:19:59 +08:00
Nick Cao 16d7f06261
eigenmath: unstable-2023-03-05 -> unstable-2023-04-07 2023-04-08 15:00:16 +08:00
Nick Cao 6c38c33f01
eigenmath: add updateScript 2023-04-08 14:58:35 +08:00
github-actions[bot] ee14a276ab
Merge master into haskell-updates 2023-04-07 00:11:54 +00:00
Justin Bedő 642ee2373c
Merge pull request #224827 from r-ryantm/auto-update/varscan 
varscan: 2.4.5 -> 2.4.6
 2023-04-06 22:51:16 +10:00
Nicolas Benes 3e886954ee spdlog: 1.10.0 -> 1.11.0 
Unpin from fmt_8.
 2023-04-06 07:25:19 +02:00
github-actions[bot] 6a7b8348a1
Merge master into haskell-updates 2023-04-06 00:11:55 +00:00
Sandro 5ea854454e
Merge pull request #224359 from hesiod/coin-utils 2023-04-06 01:08:07 +02:00
R. Ryantm 8fcdc3f62c varscan: 2.4.5 -> 2.4.6 2023-04-05 14:55:31 +00:00
Ellie Hermaszewska bd54a9047d
tamarin-prover: Allow compiling with maude-3.3 2023-04-05 14:39:55 +08:00
Ryan Lahfa ce35e61c3c
Merge pull request #221099 from evils/kicad 
kicad(-unstable): bump to latest version, cleanup and fixes
 2023-04-04 13:28:26 +02:00
Shamrock Lee 4e72d111e9 raspa: init at 2.0.47 and add tests 2023-04-03 20:53:23 +08:00
Weijia Wang 64a5b00d02
Merge pull request #224462 from wegank/scalp-mirror 
scalp: update mirror link
 2023-04-03 14:48:41 +03:00
Weijia Wang 4ad85a5c10 scalp: update mirror link 2023-04-03 14:16:03 +03:00
Tobias Markus eae9398010 clp: Change license to epl20 2023-04-03 12:57:50 +02:00
Weijia Wang 150dcd7ce7
Merge pull request #224345 from natsukium/blast/darwin 
blast-bin: init at 2.13.0
 2023-04-03 09:59:08 +03:00
natsukium cddb4a24ba
blast-bin: init at 2.13.0 2023-04-03 12:39:17 +09:00
Nick Cao 7613d23e78
Merge pull request #224414 from jbedo/last 
last: 1447 -> 1453
 2023-04-03 09:43:13 +08:00
Justin Bedo e739dc5088
last: 1447 -> 1453 2023-04-03 08:38:27 +10:00
Vincenzo Mantova acb02e2fab eukleides: move texlive dependencies to tlDeps 2023-04-02 13:00:52 +01:00
Tobias Markus 1718fc0b04 clp: 1.17.6 -> 1.17.7 2023-04-02 14:00:47 +02:00
Weijia Wang 4213fc7cde sasview: fix build 2023-04-02 15:00:07 +03:00
Vincenzo Mantova 6b2b9a0de3 eukleides: create pkgs fixpoint for texlive using mkDerivation 2023-04-02 12:58:47 +01:00
Nicolas Benes c59f6c75b6 openroad: unstable-2022-07-19 -> unstable-2023-03-31 2023-04-02 05:44:19 +02:00
natsukium 5ac95120d5
pymol: remove broken mark for darwin 
The bug has been resolved by changing the backend to Qt
in this commit, ab3f0771a4.
 2023-04-01 20:41:01 +09:00
Michal Sojka b1cb42d3b7 cppzmq: make zeromq propagatedBuildInput 
cppzmq is a header-only library. As such, it is not much useful
without zeromq, whose headers it includes. By having zeromq in
propagatedBuildInputs, we can simplify dependent expressions.

This change is motivated by
https://github.com/lopsided98/nix-ros-overlay/issues/255#issuecomment-1487590226.
The expressions in nix-ros-overlay are automatically generated and
since packages in other distributions where ROS runs need not to
explicitly depend on zeromq, the Nix expression should behave the
same. This way, nix-ros-overlay will not to have manually
patch/overlay the automatically generated expressions.
 2023-03-31 18:58:56 +02:00
Evils 23849267ee kicad-unstable: fix ngspice tests 2023-03-30 18:53:53 +02:00
MarcFontaine 2cfc128ca3
nanovna-saver: 0.5.4 -> 0.6.0 2023-03-30 10:58:55 +02:00
Evils 4f0de9463a kicad-unstable: 2023-02-14 -> 2023-03-29 
includes a fix for upstream issue 14346
  (attempting to installing pcbnew.py outside of $out)
 2023-03-30 09:22:08 +02:00
Nick Cao 2f73fede2a
calcmysky: unstable-2023-02-11 -> 0.3.0 
Diff: c5f2814528...v0.3.0
 2023-03-29 19:29:46 +08:00
Weijia Wang 626401c783
Merge pull request #220832 from wegank/glucose-bump 
glucose: 4.1 -> 4.2.1
 2023-03-29 09:13:21 +03:00
Weijia Wang 396b3b7271
Merge pull request #223075 from r-ryantm/auto-update/ginac 
ginac: 1.8.5 -> 1.8.6
 2023-03-29 00:27:26 +03:00
Mauricio Collares a4f8bf2248
Merge pull request #223497 from r-ryantm/auto-update/primecount 
primecount: 7.6 -> 7.7
 2023-03-28 20:28:02 +02:00
Evils 7f3a08710a kicad: add requests runtime dependency 
required for some of the plugins
 2023-03-28 18:57:29 +02:00
Evils d8020e1e17 kicad: remove withOCC and more cmakeFlags cleanup 
OCC is no longer optional
RPATH apparently no longer contains references to /build/
KICAD_SCRIPTING_WXPYTHON is ON by default

sort some of the options a bit

and remove stray lndir
 2023-03-28 18:57:29 +02:00
Evils 788df5456b kicad: 7.0.0 -> 7.0.1 
remove now integrated patches
 2023-03-28 18:57:29 +02:00
Weijia Wang eac1ecb55a
Merge pull request #222531 from r-ryantm/auto-update/sumo 
sumo: 1.15.0 -> 1.16.0
 2023-03-28 16:47:07 +03:00
Nick Cao 98f3b08f58
Merge pull request #223453 from kilianar/stellarium-23.1 
stellarium: 1.2 -> 23.1
 2023-03-28 18:29:13 +08:00
Ali Caglayan 8fe1ea496b coq: 8.16.1 -> 8.17.0 
Signed-off-by: Ali Caglayan <alizter@gmail.com>
 2023-03-28 08:13:12 +02:00
R. Ryantm 3b3cc65701 primecount: 7.6 -> 7.7 2023-03-28 04:37:03 +00:00
kilianar d19f5dedec stellarium: 1.2 -> 23.1 
https://github.com/Stellarium/stellarium/releases/tag/v23.1

Mitigates https://github.com/advisories/GHSA-7vmm-m8vp-g5h3
 2023-03-28 00:22:36 +02:00
kilianar 733e7c52c2 calcmysky: 0.2.1 -> unstable-203-02-11 2023-03-28 00:03:32 +02:00
Weijia Wang c9d051b17d
Merge pull request #222979 from r-ryantm/auto-update/cvc5 
cvc5: 1.0.4 -> 1.0.5
 2023-03-27 09:36:32 +03:00
Sandro c2ef479b62
Merge pull request #168773 from Leixb/megam-add-opt 2023-03-27 00:59:44 +02:00
Justin Bedő c39e3d9b74
Merge pull request #221546 from NixOS/r-updates 
R: 4.2.2 -> 4.2.3
 2023-03-26 21:40:30 +00:00
github-actions[bot] 07fb9cae4e
Merge master into staging-next 2023-03-26 00:02:45 +00:00
Artturi b213126ec0
Merge pull request #222766 from Artturin/fix-different-store 2023-03-25 22:17:07 +02:00
R. Ryantm 2cb2ee9630 ginac: 1.8.5 -> 1.8.6 2023-03-25 14:10:42 +00:00
R. Ryantm bb270775f2 cvc5: 1.0.4 -> 1.0.5 2023-03-25 01:00:12 +00:00
github-actions[bot] cead7e3e73
Merge master into staging-next 2023-03-25 00:02:20 +00:00
Weijia Wang 2ce97f2bf9
Merge pull request #222464 from r-ryantm/auto-update/diamond 
diamond: 2.1.5 -> 2.1.6
 2023-03-24 20:56:17 +02:00
Artturin 780669daf5 treewide: don't hardcode /nix/store (no rebuilds changes) 
improve experience for other store locations
 2023-03-24 20:11:33 +02:00
github-actions[bot] adec6862c5
Merge master into staging-next 2023-03-24 18:01:06 +00:00
LeixB d443805fe3
megam: add leixb as maintainer 2023-03-24 18:52:48 +01:00
LeixB d85fae35d9
megam: add megam.opt binary 
- Add megam.opt (optimized native binary)
 2023-03-24 18:52:14 +01:00
Vladimír Čunát 1f1c1739d7
Merge #222442: R: override test for curl version 
...into staging-next
 2023-03-23 11:07:36 +01:00
R. Ryantm d2bf9653de gretl: 2022c -> 2023a 2023-03-23 06:03:08 +00:00
github-actions[bot] 85f7b5276e
Merge master into staging-next 2023-03-22 18:01:11 +00:00
Luflosi ddb714f68d
yices: fix typo in comment 2023-03-22 16:08:09 +01:00
Weijia Wang 120a484726
Merge pull request #220001 from wegank/isabelle-arm 
isabelle: add aarch64-linux support
 2023-03-22 16:15:34 +02:00
R. Ryantm 91c2c00aad sumo: 1.15.0 -> 1.16.0 2023-03-22 12:07:12 +00:00
github-actions[bot] 0537539006
Merge master into staging-next 2023-03-22 12:01:22 +00:00
Nick Cao 6c4095e7af
Merge pull request #222331 from r-ryantm/auto-update/seqkit 
seqkit: 2.3.1 -> 2.4.0
 2023-03-22 16:08:39 +08:00
R. Ryantm 4c2324cf14 diamond: 2.1.5 -> 2.1.6 2023-03-22 03:09:40 +00:00
MaxHearnden bfbc0f56e5 override test for curl version 2023-03-21 22:50:14 +00:00
Vincent Laporte 48774c43cd
acgtk: use Dune 3 2023-03-21 13:05:53 +01:00
R. Ryantm a6f33bd62f seqkit: 2.3.1 -> 2.4.0 2023-03-21 10:45:22 +00:00
R. Ryantm 4da1bc0bfa marvin: 22.13.0 -> 23.4.0 2023-03-21 07:22:28 +00:00
github-actions[bot] bb48723d63
Merge master into staging-next 2023-03-21 00:02:39 +00:00
Vincent Laporte e12230e716
why3: 1.5.1 → 1.6.0; ocamlPackages.lambdapi: 2.2.1 → 2.3.1 (#220986) 
why3: 1.5.1 → 1.6.0
ocamlPackages.lambdapi: 2.2.1 → 2.3.1

Co-authored-by: Weijia Wang <9713184+wegank@users.noreply.github.com>
 2023-03-20 20:45:47 +01:00
Martin Weinelt 9959ec97f8
Merge remote-tracking branch 'origin/master' into staging-next 
Conflicts:
- pkgs/development/python-modules/wxPython/4.0.nix
- pkgs/development/python-modules/wxPython/4.1.nix
 2023-03-20 15:07:36 +01:00
Weijia Wang 802b7ac3e7
Merge pull request #221743 from r-ryantm/auto-update/gatk 
gatk: 4.3.0.0 -> 4.4.0.0
 2023-03-20 14:33:37 +02:00
github-actions[bot] 96f7385465
Merge master into staging-next 2023-03-20 00:02:29 +00:00
Mauricio Collares bd3de7859d
Merge pull request #221718 from wegank/sage-fix 
sage: add libpng to sagelib, import package update patches
 2023-03-19 19:31:02 +01:00
github-actions[bot] 84c97a9e91
Merge master into staging-next 2023-03-19 18:00:59 +00:00
Weijia Wang 2572ddc706
Merge pull request #221977 from wegank/mavproxy-wx 
mavproxy: migrate to wxPython_4_2
 2023-03-19 20:00:39 +02:00
Weijia Wang a1e27cf0e9 sage: add libpng to sagelib 2023-03-19 19:33:36 +02:00
Mauricio Collares c13d98c7bf sage: import python package upgrade fixes 2023-03-19 19:32:56 +02:00
natsukium 21affa5ff1
trf: init at 4.09.1 2023-03-19 22:25:42 +09:00
Weijia Wang 4fe9738427 mavproxy: migrate to wxPython_4_2 2023-03-19 10:29:51 +02:00
github-actions[bot] c70342c89c
Merge master into staging-next 2023-03-19 00:02:27 +00:00
Weijia Wang 7574e25ef3
Merge pull request #221864 from natsukium/mafft/update 
mafft: 7.508 -> 7.515
 2023-03-19 00:03:19 +02:00
Weijia Wang 8da8071e37 glucose: 4.1 -> 4.2.1 2023-03-18 22:17:16 +02:00
github-actions[bot] 403b148aa5
Merge master into staging-next 2023-03-18 18:01:02 +00:00
Weijia Wang 0ddc01c569 glucose: refactor 2023-03-18 19:00:45 +02:00
natsukium f3b75ef3ce
mafft: 7.508 -> 7.515 2023-03-19 00:42:29 +09:00
Weijia Wang f15cf7e6af
Merge pull request #221809 from wegank/nest-bump 
nest: 3.3 -> 3.4
 2023-03-18 17:17:18 +02:00
github-actions[bot] a912b83051
Merge master into staging-next 2023-03-18 12:01:30 +00:00
Weijia Wang b45fe715d9
Merge pull request #217922 from r-ryantm/auto-update/openboardview 
openboardview: 9.0.3 -> 9.95.0
 2023-03-18 13:00:52 +02:00
Fabian Affolter 109f8ccdfe
nest: specify license 2023-03-18 11:23:52 +01:00
Fabian Affolter c7ec291235
nest: add changelog to meta 2023-03-18 11:23:06 +01:00
Weijia Wang ea847dd1a0 nest: 3.3 -> 3.4 2023-03-18 12:13:46 +02:00
R. Ryantm 0d44f838ca gatk: 4.3.0.0 -> 4.4.0.0 2023-03-18 01:10:14 +00:00
K900 a5a292c7a8 treewide: clear out remaining qt5 conditionals 2023-03-18 02:10:20 +03:00
github-actions[bot] d761f69867
Merge master into staging-next 2023-03-17 17:57:00 +00:00
Markus Kowalewski 545b5d04f4
openmolcas: 22.10 -> 23.02 2023-03-17 13:33:41 +01:00
github-actions[bot] 2394986204
Merge master into staging-next 2023-03-17 12:01:17 +00:00
Weijia Wang 9c8a92bcde
Merge pull request #205310 from r-ryantm/auto-update/sumo 
sumo: 1.9.2 -> 1.15.0
 2023-03-17 12:56:48 +02:00
github-actions[bot] f5629a4518
Merge master into staging-next 2023-03-17 06:01:16 +00:00
Weijia Wang 854414836c
Merge pull request #221529 from wegank/qalculate-qt-darwin 
qalculate-qt: add darwin support
 2023-03-17 07:47:56 +02:00
Justin Bedő bf32c70253
Merge pull request #221559 from r-ryantm/auto-update/subread 
subread: 2.0.3 -> 2.0.4
 2023-03-17 01:57:57 +00:00
github-actions[bot] 6746017444
Merge master into staging-next 2023-03-17 00:02:33 +00:00
R. Ryantm 2a35b86739 subread: 2.0.3 -> 2.0.4 2023-03-16 23:09:44 +00:00
markuskowa 0fea9287f4
Merge pull request #221301 from sheepforce/plumed 
plumed: init at 2.8.2
 2023-03-16 20:43:54 +01:00
Weijia Wang 5c214fb163 qalculate-qt: add darwin support 2023-03-16 21:31:51 +02:00
github-actions[bot] 455127ad5e
Merge master into staging-next 2023-03-16 18:01:20 +00:00
Weijia Wang 183c970c9a
Merge pull request #221403 from r-ryantm/auto-update/gama 
gama: 2.23 -> 2.24
 2023-03-16 18:03:12 +02:00
Weijia Wang de6210e074
Merge pull request #217539 from GenericNerdyUsername/horizon-occ 
horizon-eda: switch from OCE to OCC
 2023-03-16 17:20:47 +02:00
Bernardo Meurer 6e55733359
Merge pull request #219747 from Stunkymonkey/deprecate-isNull 2023-03-16 11:10:22 -03:00
Phillip Seeber 09b52c631a cp2k: enable plumed plugin 
cp2k: enable plumed plugin


cp2k: use mpicxx to figure out link lines
 2023-03-16 14:30:27 +01:00
github-actions[bot] 80a0ae17b5
Merge master into staging-next 2023-03-16 12:01:29 +00:00
Vladimír Čunát 0f9354bfee
Merge #218309: ffmpeg: ffmpeg_4 → ffmpeg_5 
...into staging
 2023-03-16 11:11:31 +01:00
Weijia Wang b3e468975f
Merge pull request #221402 from r-ryantm/auto-update/uarmsolver 
uarmsolver: 0.2.4 -> 0.2.5
 2023-03-16 09:09:24 +02:00
R. Ryantm 166bed2b29 gama: 2.23 -> 2.24 2023-03-16 00:43:50 +00:00
R. Ryantm 139df052d5 uarmsolver: 0.2.4 -> 0.2.5 2023-03-16 00:42:06 +00:00
github-actions[bot] a8ddab03b5
Merge staging-next into staging 2023-03-16 00:03:10 +00:00
Weijia Wang b8aec5ff2d
Merge pull request #221107 from r-ryantm/auto-update/openhantek6022 
openhantek6022: 3.3.2.1 -> 3.3.2.2
 2023-03-15 22:09:12 +02:00
Martin Weinelt 19680e9902
Merge pull request #217568 from trofi/stdenv-parallel-install 
stdenv/generic/setup.sh: enable parallel installs for parallel builds
 2023-03-15 17:10:19 +00:00
Justin Bedo 5eff9f1940
R: 4.2.2 -> 4.2.3 2023-03-15 22:51:17 +11:00
Martin Weinelt 9e4d592114
Merge remote-tracking branch 'origin/master' into staging-next 
Conflicts:
- pkgs/development/python-modules/eve/default.nix
 2023-03-14 16:49:37 +01:00
Weijia Wang 6bade5f7df tamarin-prover: only use glibcLocales on linux 2023-03-14 15:55:12 +02:00
Philipp Middendorf f43390024c crystfel: more review fixes 2023-03-14 08:36:38 +01:00
Martin Weinelt 6b67186fe9
Merge remote-tracking branch 'origin/master' into staging-next 
Conflicts:
- pkgs/development/python-modules/crownstone-cloud/default.nix
- pkgs/development/python-modules/exrex/default.nix
- pkgs/development/python-modules/mkdocs-minify/default.nix
- pkgs/development/python-modules/myjwt/default.nix
- pkgs/development/tools/analysis/checkov/default.nix
 2023-03-14 08:14:26 +01:00
Weijia Wang 5a0dde3bf1
Merge pull request #221042 from r-ryantm/auto-update/calc 
calc: 2.14.1.3 -> 2.14.1.5
 2023-03-14 08:23:20 +02:00
R. Ryantm 58a2c5a184 openhantek6022: 3.3.2.1 -> 3.3.2.2 2023-03-14 03:37:23 +00:00
Artturi b978bf0f0f
Merge pull request #220570 from Artturin/fixlints1 2023-03-14 02:15:55 +02:00
Atemu 9bd2506458 treewide: make ffmpeg_4-dependant packages depend on ffmpeg_4 
These packages were identified as broken when ffmpeg = ffmpeg_5.

Tested _only_ by building them. If you are a maintainer of one of these
packages, please test whether your package still works.
 2023-03-13 16:42:22 -06:00
R. Ryantm 70723fce93 calc: 2.14.1.3 -> 2.14.1.5 2023-03-13 18:59:18 +00:00
Vladimír Čunát 2d51a0e8ad
Merge branch 'master' into staging-next 2023-03-13 08:25:10 +01:00
Austin Seipp 787381926a tamarin-prover: set LOCALE_ARCHIVE in wrapper 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2023-03-12 19:06:58 -05:00
Luflosi e8f1fcd350 abc-verifier: unstable-2023-02-04 -> unstable-2023-02-23 2023-03-12 18:10:19 -05:00
Martin Weinelt 5abe72f0b2 Merge remote-tracking branch 'origin/master' into staging-next 
Conflicts:
- pkgs/development/python-modules/mdutils/default.nix
 2023-03-12 15:59:15 +01:00
Mauricio Collares 652e253e26
Merge pull request #220559 from amesgen/fix-sage 
sage: fix build by downgrading maxima to 5.45
 2023-03-12 14:51:57 +01:00
Vladimír Čunát 1dd94ad62f
Merge branch 'master' into staging-next 2023-03-12 09:06:28 +01:00
R. Ryantm 77c83ddbc9 diamond: 2.1.4 -> 2.1.5 2023-03-11 18:22:58 +00:00
github-actions[bot] 140a35879a
Merge master into staging-next 2023-03-11 12:01:11 +00:00
Artturin cab4a24c34 treewide: fix lints 
Arg to lib.optional is a list

build time tool in buildInputs
 2023-03-11 00:55:17 +02:00
amesgen 0a1a3e9d95
maxima-ecl: fix build by removing upstreamed patch 2023-03-10 21:57:12 +01:00
amesgen 70b827c60a
sage: fix build by downgrading maxima to 5.45 2023-03-10 21:55:54 +01:00
Martin Weinelt ef91384e6f Merge remote-tracking branch 'origin/master' into staging-next 2023-03-10 13:09:25 +01:00
Yueh-Shun Li 564e20e62d
Revert "root: remove the already-default CMAKE_INSTALL_*DIR flags" (#220437) 
For some reason, this makes $out/bin/rootcint disappear

$out/bin/rootcint is a duplication of $out/bin/rootcling
for compatibility reason

This reverts commit c09e03c1a6.
 2023-03-10 01:48:11 -05:00
Sergei Trofimovich 03be09d518 gretl: disable install parallelism 
Without the change parallel installs fail as:

    cp: cannot stat '...-gretl-2022c/share/gretl/data/plotbars': Not a directory
    make[1]: *** [Makefile:73: install_datafiles] Error 1
 2023-03-09 22:29:59 +00:00
Martin Weinelt 4729f61158 Merge remote-tracking branch 'origin/master' into staging-next 2023-03-08 15:04:13 +01:00
Doron Behar ba4d56e20e tamarin-prover: install vim-plugin to nvim/site 2023-03-08 12:32:40 +02:00
Philipp Middendorf d980b91866 crystfel: review fixes 2023-03-08 08:57:52 +01:00
github-actions[bot] f1b48b2a95
Merge master into staging-next 2023-03-07 18:01:12 +00:00
R. RyanTM 02cd0a5dfc
sherpa: 2.2.13 -> 2.2.14 (#220016) 2023-03-07 12:47:54 -05:00
Weijia Wang 3e5f408e73 isabelle: add aarch64-linux support 2023-03-07 18:20:46 +02:00
Martin Weinelt e3f019bb71 Merge remote-tracking branch 'origin/master' into staging-next 2023-03-07 15:05:00 +01:00
Atemu acdc303ed7
Merge pull request #219836 from wegank/leo2-darwin 
leo2, statverif: add darwin support
 2023-03-07 13:24:35 +01:00
Philipp Middendorf da46337f0e crystfel: enable aarch64-* and external filter plugins on Darwin 2023-03-07 09:52:58 +01:00
github-actions[bot] fa94414f70
Merge master into staging-next 2023-03-07 00:02:41 +00:00
Doron Behar 33c9fd85e5
Merge pull request #219838 from alyaeanyx/qalculate-4.6.0 
{libqalculate, qalculate-gtk, qalculate-qt}: 4.5.1 -> 4.6.0
 2023-03-07 01:11:37 +02:00
Weijia Wang 3d70562dfd leo2: add darwin support 2023-03-07 00:10:09 +02:00
Felix Buehler d10e69c86b treewide: deprecate isNull 
https://nixos.org/manual/nix/stable/language/builtins.html#builtins-isNull
 2023-03-06 22:40:04 +01:00
Ilan Joselevich e398da1460
Merge pull request #219606 from wegank/vampire-aarch64 
vampire: unbreak on aarch64-linux
 2023-03-06 22:19:54 +02:00
Martin Weinelt bcf6c81a88 Merge remote-tracking branch 'origin/master' into staging-next 2023-03-06 16:55:14 +00:00
Samuel Ainsworth e1fbe85b0a
Merge pull request #218265 from SomeoneSerge/hotfix-nvcc-gcc-incompatibility 
cudaPackages: point nvcc at a compatible -ccbin
 2023-03-06 11:38:18 -05:00
alyaeanyx 2d1959e445 libqalculate, qalculate-gtk: 4.5.1 -> 4.6.0 2023-03-06 15:17:20 +01:00
K900 2fe3640540
Merge pull request #219425 from wegank/gcc12-cleanup 
treewide: remove -lgcc from NIX_LDFLAGS
 2023-03-06 17:05:12 +03:00
github-actions[bot] a5961d9534
Merge master into staging-next 2023-03-06 12:01:40 +00:00
Weijia Wang 55bb9cd6c0
Merge pull request #219604 from wegank/glsurf-ocaml 
glsurf: migrate to OCaml 4.14
 2023-03-06 11:05:05 +02:00
github-actions[bot] cb98531909
Merge master into staging-next 2023-03-05 18:01:28 +00:00
Nick Cao 794f34657e
Merge pull request #219625 from NickCao/eigenmath 
eigenmath: init at unstable-2023-03-05
 2023-03-05 23:20:20 +08:00
Martin Weinelt 8a085cd8e3 Merge remote-tracking branch 'origin/master' into staging-next 2023-03-05 15:36:16 +01:00
Weijia Wang e6725b74f8
Merge pull request #219515 from r-ryantm/auto-update/diamond 
diamond: 2.1.3 -> 2.1.4
 2023-03-05 13:59:24 +02:00
Guillaume Girol 768a866917
Merge pull request #216864 from ShamrockLee/root-debug-info 
root: separateDebugInfo = true
 2023-03-05 10:28:50 +00:00
Weijia Wang a56529a95f glsurf: fix runtime error 2023-03-05 12:05:39 +02:00
Nick Cao 32b51c198f
eigenmath: init at unstable-2023-03-05 2023-03-05 16:17:38 +08:00
github-actions[bot] 6413316565
Merge master into staging-next 2023-03-05 06:01:04 +00:00
Doron Behar a1240f6b4a
Merge pull request #219171 from doronbehar/pkg/maxima 
maxima: 5.45.1 -> 5.46.0
 2023-03-05 07:58:10 +02:00
Martin Weinelt c76553c9a6 Merge remote-tracking branch 'origin/master' into staging-next 2023-03-05 01:14:06 +00:00
Weijia Wang 3796e59136 vampire: unbreak on aarch64-linux 2023-03-05 02:21:12 +02:00
Weijia Wang cc4169d737 glsurf: migrate to OCaml 4.14 2023-03-05 02:03:44 +02:00
Weijia Wang 1148f28242 cubicle: set env instead of postPatch 2023-03-05 01:44:26 +02:00
Yueh-Shun Li b96226578e
root: specify separateDebugInfo = true for all pltforms 2023-03-05 03:30:17 +08:00
R. Ryantm e175a2ea68 diamond: 2.1.3 -> 2.1.4 2023-03-04 15:44:53 +00:00
Weijia Wang ac62a206b7 root: remove -lgcc from NIX_LDFLAGS 2023-03-04 11:51:34 +02:00
Yueh-Shun Li c89c22a9c2 root: separateDebugInfo = true on Linux 2023-03-04 15:05:26 +08:00
Martin Weinelt d0286ecd24 Merge remote-tracking branch 'origin/staging' into staging-next 2023-03-04 01:42:06 +00:00
Someone Serge d378cc6fb2
opencv4: respect config.cudaCapabilities 
This is needed for faster builds when debugging the opencv derivation,
and it's more consistent with other cuda-enabled packages

-DCUDA_GENERATION seems to expect architecture names, so we refactor
cudaFlags to facilitate easier extraction of the configured archnames
 2023-03-04 00:59:21 +02:00
Justin Bedő 5ba0152b6c
Merge pull request #218998 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.27.5 -> 3.0.0
 2023-03-03 22:26:27 +00:00
Doron Behar f002f6e8ab wxmaxima: 22.12.0 -> 23.02.1 
Diff: https://github.com/wxMaxima-developers/wxmaxima/compare/Version-22.12.0...23.02.1
 2023-03-02 15:11:08 +02:00
Doron Behar b53da37836 maxima: 5.45.1 -> 5.46.0 2023-03-02 15:11:00 +02:00
github-actions[bot] 736c488efe
Merge staging-next into staging 2023-03-01 18:01:48 +00:00
R. Ryantm 99785ee90e picard-tools: 2.27.5 -> 3.0.0 2023-03-01 14:43:38 +00:00
Sandro 2c6a017a7e
Merge pull request #217622 from ksenia-portu/mathematica 
mathematica: 13.2.0 -> 13.2.1
 2023-03-01 13:32:33 +01:00
github-actions[bot] 5f2d948a2c
Merge staging-next into staging 2023-03-01 12:02:17 +00:00
Sandro b687a76e0e
Merge pull request #217982 from pmiddend/crystfel-0.10.2 
crystfel: 0.10.1 → 0.10.2
 2023-03-01 11:45:16 +01:00
Martin Weinelt 3686005e6e Merge remote-tracking branch 'origin/staging-next' into staging 2023-02-28 21:17:51 +00:00
Weijia Wang 4389f86425
Merge pull request #211867 from wegank/scilab-bin-refactor 
scilab-bin: refactor
 2023-02-28 22:29:34 +02:00
Weijia Wang ccd9d6da1e
Merge pull request #218118 from r-ryantm/auto-update/diamond 
diamond: 2.1.1 -> 2.1.3
 2023-02-27 21:28:18 +02:00
Artturi 1c6a1e5650
Merge pull request #218500 from alyssais/pythonForBuild 2023-02-27 18:17:27 +02:00
Weijia Wang 21bb99733d
Merge pull request #218342 from r-ryantm/auto-update/bcftools 
bcftools: 1.16 -> 1.17
 2023-02-27 18:02:55 +02:00
Philipp Middendorf fca0501c76 crystfel: 0.10.1 → 0.10.2 2023-02-27 09:01:51 +01:00
Alyssa Ross 2bfa93e01c
treewide: python{ => .pythonForBuild}.interpreter 
It won't be enough to fix cross in all cases, but it is in at least
one: pywayland.  I've only made the change in cases I'm confident it's
correct, as it would be wrong to change this when python.interpreter
is used in wrappers, and possibly when it's used for running tests.
 2023-02-26 20:26:17 +00:00
Weijia Wang b390b634c4
Merge pull request #218384 from r-ryantm/auto-update/neuron-full 
neuron-full: 8.2.1 -> 8.2.2
 2023-02-26 18:42:25 +02:00
Weijia Wang 4be6baacfe
Merge pull request #218170 from r-ryantm/auto-update/readstat 
readstat: 1.1.8 -> 1.1.9
 2023-02-26 12:24:53 +02:00
R. Ryantm f2465e1ecf neuron-full: 8.2.1 -> 8.2.2 2023-02-26 05:18:37 +00:00
R. Ryantm 95ca5f576c bcftools: 1.16 -> 1.17 2023-02-25 23:02:27 +00:00
Norbert Melzer d6f93d07b4
Merge pull request #210627 from wizeman/u/fix-fstar 2023-02-25 22:03:46 +01:00
Weijia Wang c8ba046415
Merge pull request #217897 from DavidCromp/nest 
nest: fix Python & Darwin
 2023-02-25 19:47:22 +02:00
DavidCromp 5ce4a02687 nest: fix Python & Darwin 
Removed auto-patch-elf and replaced with find command that moves
libraries where they are expected by nest. Auto-patchelf isn't
supported on aarch64, so I copied my local derivation fix I've been
using.

PyNEST also requires numpy, so that has been added to
propagatedbuildinputs.

Also added support for OpenMP on Darwin.
 2023-02-25 10:28:59 -05:00
Artturi 8e027ec1d1
Merge pull request #218240 from amesgen/tandem-aligner-fix-build-gcc-12 2023-02-25 15:35:12 +02:00
amesgen a85b73c514
tandem-aligner: fix build with GCC 12 2023-02-25 13:40:11 +01:00
R. Ryantm ed6c7c8161 readstat: 1.1.8 -> 1.1.9 2023-02-25 06:18:17 +00:00
R. Ryantm 60ee2eaf54 diamond: 2.1.1 -> 2.1.3 2023-02-24 23:46:09 +00:00
Samuel Ainsworth d24dde7f6c
Merge pull request #217367 from ConnorBaker/feat/cudaFlags-arch-rewrite 
cudaFlags: rewrite to capture all architectures and fix NixOS#215436
 2023-02-24 17:31:11 -05:00
Weijia Wang 0bbc6ebd58
Merge pull request #211065 from r-ryantm/auto-update/streamlit 
streamlit: 1.16.0 -> 1.18.1
 2023-02-25 00:15:30 +02:00
Jörg Thalheim a9167d159b
Merge pull request #217989 from kilianar/cryptominisat-5.11.4 
cryptominisat: 5.8.0 -> 5.11.4
 2023-02-24 12:31:35 +01:00
kilianar 8a10153e82 cryptominisat: 5.8.0 -> 5.11.4 
https://github.com/msoos/cryptominisat/releases/tag/5.11.4
 2023-02-24 09:32:00 +01:00
Paul 0351445e24 z3: 4.8.15 -> 4.8.17 
The motivation for bumping to 4.8.17 is to permit the latest version of
solc to be built with z3.
https://github.com/Z3Prover/z3/releases/tag/z3-4.8.17
 2023-02-24 07:01:31 +01:00
R. Ryantm 3f08dd7eee openboardview: 9.0.3 -> 9.95.0 2023-02-23 22:33:55 +00:00
Connor Baker dddc103fdb cudaFlags: rewrite to capture all architechtures and fix #215436 2023-02-23 16:34:12 -05:00
Bernardo Meurer 42008a14a4
Merge pull request #217206 from Artturin/stdenvimprovements1 2023-02-23 12:07:47 +00:00
Nick Cao 12f94adb89
Merge pull request #217702 from Luflosi/update/yosys 
yosys: 0.25 -> 0.26
 2023-02-23 10:50:23 +08:00
Robert Schütz 0d2542fa9d flatcam: pin shapely at 1.8.4 2023-02-22 17:39:49 -08:00
Artturin 3251013cc1 treewide: env.NIX_CFLAGS_COMPILE use toString on result of optionals 
env values must be strings
 2023-02-22 21:23:05 +02:00
Artturin 226e149145 treewide: env.NIX_CFLAGS_COMPILE use optionalString instead of optional 
env values must be strings
 2023-02-22 21:23:05 +02:00
Artturin 6b2a05e190 treewide: manual fixups for 
treewide: use toString on list NIX_CFLAGS_COMPILE
treewide: move NIX_CFLAGS_COMPILE to the env attrset
 2023-02-22 21:23:04 +02:00
Artturin f9fdf2d402 treewide: move NIX_CFLAGS_COMPILE to the env attrset 
with structuredAttrs lists will be bash arrays which cannot be exported
which will be a issue with some patches and some wrappers like cc-wrapper

this makes it clearer that NIX_CFLAGS_COMPILE must be a string as lists
in env cause a eval failure
 2023-02-22 21:23:04 +02:00
Artturin 6f6cc4a22d treewide: use toString on list NIX_CFLAGS_COMPILE 
with structuredAttrs lists will be bash arrays which cannot be exported
which will be a issue with some patches and some wrappers like cc-wrapper
 2023-02-22 21:23:04 +02:00
Samuel Ainsworth 2308c637ef
Merge pull request #217330 from ConnorBaker/fix/caffe-use-pre-cudnn8 
caffe: use pre-CUDNN 8.x
 2023-02-22 12:53:26 -05:00