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1387 commits

Author SHA1 Message Date
R. Ryantm 01507d38f8 plumed: 2.8.2 -> 2.9.0 2023-05-30 00:57:30 +00:00
R. Ryantm 10fef5f965 osqp: 0.6.2 -> 0.6.3 2023-05-28 08:13:13 +00:00
Samuel Ainsworth bbdb8416a0
Merge pull request #233851 from ConnorBaker/feat/cudnn_8_9_1 
cudaPackages.cudnn: version bumps; remove patch from name
 2023-05-26 10:26:30 -07:00
MaxHearnden f5df7df08c pkgsStatic.mkl: change tools dir to lib 
when installing pkg-config files
 2023-05-26 12:57:48 +01:00
Phillip Seeber 4f2313dd90 dbcsr: init at 2.5.0 
dbcsr: move openssh to checkInputs
 2023-05-25 13:57:58 +02:00
Connor Baker 222d966273 cudaPackages.cudnn: remove patch version from name to conform with cudaPackages standard 2023-05-24 12:56:22 -04:00
Connor Baker 9d7f13350d cudaPackages.cudnn_8_9: init at 8.9.1.23 2023-05-24 12:39:33 -04:00
Connor Baker 60fdc732be cudaPackages.cudnn_8_8: 8.8.0.121 -> 8.8.1.3 2023-05-24 12:39:09 -04:00
Alexander Kiselyov f7e665ccce petsc: 3.17.4 -> 3.19.1, fixed build 
PETSc versions earlier than 3.18.6 are broken because of incorrect make
option generation.
 2023-05-22 15:59:44 +03:00
Mario Rodas 5ffdf341ff faiss: fix pythonImportsCheck usage in comment 2023-05-13 04:20:00 +00:00
github-actions[bot] 3510094ebe
Merge master into staging-next 2023-05-07 00:02:36 +00:00
R. Ryantm dfef829c3b papi: 7.0.0 -> 7.0.1 2023-05-06 12:26:22 +00:00
github-actions[bot] f62c3cbbdc
Merge master into staging-next 2023-05-06 00:02:06 +00:00
Robert Scott 0b194c8c15
Merge pull request #229370 from risicle/ris-tensorflow-lite-known-vulnerabilities 
tensorflow-lite: mark with `knownVulnerabilities`
 2023-05-05 19:37:04 +01:00
github-actions[bot] d32585d4cb
Merge master into staging-next 2023-05-05 06:01:19 +00:00
Nick Cao b31bf268dc
Merge pull request #224083 from SomeoneSerge/update-faiss-1.7.3 
faiss: 1.7.2 -> 1.7.4
 2023-05-05 08:38:40 +08:00
github-actions[bot] 4e4f76837c
Merge master into staging-next 2023-05-04 18:01:17 +00:00
Someone Serge f66901ff23
faiss.tests.pytest: disable a failing float-vs-double test 2023-05-04 20:20:51 +03:00
R. Ryantm 4f4354aa03 coin-utils: 2.11.8 -> 2.11.9 2023-05-04 11:14:42 +00:00
Robert Scott bbdaf29ab4 tensorflow-lite: mark with knownVulnerabilities 2023-05-01 22:32:55 +01:00
github-actions[bot] cff4be2a2b
Merge staging-next into staging 2023-05-01 12:01:54 +00:00
Weijia Wang 623ae50358
Merge pull request #229073 from jackyliu16/loongarch-support 
openblas: Enable loongarch64-linux
 2023-05-01 13:33:28 +03:00
Vladimír Čunát 2ca9257f9c
Merge #229148: python3Packages.{or-tools,protobuf}: remove dev output 
...into staging
 2023-05-01 10:10:23 +02:00
Connor Baker 9d27bdd3b5
Merge pull request #227962 from ConnorBaker/feat/cuda-12_1_1 
cudaPackages_12_1: init at 12.1.1; cudnn: don't break cudaPackages
 2023-04-30 12:43:45 -07:00
Ben Wolsieffer ad454c1708 or-tools: remove dev output 
or-tools has buggy CMake scripts that don't pick up on the proper install
locations. This needs to fixed upstream, but I don't have time to do this right
now. Removing the dev output will cause cross-compiled builds to have build
platform contamination due to propagated native protobuf.
 2023-04-30 12:52:35 -04:00
Weijia Wang c8f1166ce6 openblas: fix build on new-world loongarch 2023-04-30 13:59:15 +03:00
jackyliu16 e7038aee97 openblas: Enable loongarch64-linux 
ref:
    https://www.phoronix.com/news/OpenBLAS-0.3.18-Released
    https://github.com/xianyi/OpenBLAS/blob/develop/TargetList.txt
 2023-04-30 13:56:13 +03:00
R. Ryantm 236342275d scs: 3.2.0 -> 3.2.3 2023-04-29 13:27:44 +00:00
Weijia Wang 0b863fe2df mkl: linux: 2023.0.0 -> 2023.1.0 2023-04-29 02:05:32 +03:00
Weijia Wang d5e8851f6f mkl: darwin: 2019.3 -> 2023.1.0 2023-04-29 02:05:28 +03:00
Someone Serge 416dba1bbc
faiss.tests: format = "other" now required 2023-04-28 11:57:30 +03:00
Weijia Wang 4a124220c5
Merge pull request #228294 from r-ryantm/auto-update/osi 
osi: 0.108.7 -> 0.108.8
 2023-04-27 00:50:12 +03:00
R. Ryantm bea4adb31f osi: 0.108.7 -> 0.108.8 2023-04-26 08:59:56 +00:00
github-actions[bot] 134b2c3768
Merge master into staging-next 2023-04-26 00:02:00 +00:00
Connor Baker 3b143e37e7 cudaPackages_12_1: init at 12.1.1; cudnn: don't break cudaPackages when unsupported 
The `throwIf` expression in CUDNN was evaluated eagerly and essentially prevented the use of cudaPackages without a supported version of CUDNN (even when CUDNN was not requested).
 2023-04-25 14:07:39 -04:00
Someone Serge 46f2664b6f
faiss: 1.7.2 -> 1.7.4 2023-04-24 13:44:56 +03:00
R. Ryantm e5b55e5b54 coin-utils: 2.11.6 -> 2.11.8 2023-04-22 10:51:46 +00:00
github-actions[bot] 2994ad0fdd
Merge master into staging-next 2023-04-21 06:01:08 +00:00
Mario Rodas dd547031af
Merge pull request #226549 from panicgh/libxisf 
libxisf: init at 0.2.3
 2023-04-20 19:51:41 -05:00
github-actions[bot] 7fea76bc9d
Merge master into staging-next 2023-04-21 00:02:18 +00:00
R. Ryantm faee184a8d suitesparse-graphblas: 7.4.3 -> 7.4.4 2023-04-20 14:59:46 +00:00
github-actions[bot] e3d1e50acd
Merge master into staging-next 2023-04-20 00:02:04 +00:00
Vladimír Čunát 91108545c4
Merge #205199: or-tools: enable cross-compilation 
...into staging
 2023-04-17 18:01:53 +02:00
Nicolas Benes a632358710 libxisf: init at 0.2.3 2023-04-17 01:50:36 +02:00
R. Ryantm af12a002c7 ipopt: 3.14.11 -> 3.14.12 2023-04-16 06:53:27 +00:00
Weijia Wang 83ed2b7e9a indilib: add aarch64-darwin support 2023-04-15 03:10:34 +03:00
Sandro 16068e09ca
Merge pull request #218157 from OmnipotentEntity/katago-1.12.4 
katago: 1.11.0 -> 1.12.4
 2023-04-13 15:43:27 +02:00
Robert Scott 2107f7de60
Merge pull request #225865 from bzizou/samtools 
samtools: 1.13 -> 1.17
 2023-04-13 00:10:42 +01:00
Ben Wolsieffer 1d5e5ca56d or-tools: fix cross-compilation 
Enable cross-compilation of or-tools and python3Packages.ortools. This requires
telling it where to find protoc and providing Python dependencies for the
correct platform. In nativeBuildInputs, we have to explicitly use pythonForBuild
because python3Packages.ortools overrides Python, which prevents splicing from
working.

Lastly, we need to split outputs to avoid protobuf's propagatedNativeBuildInputs
dependency on build-platform protobuf (protoc) becoming part of the runtime
closure.
 2023-04-12 15:39:05 -04:00
Bruno Bzeznik e7c857571a htslib: 1.16 -> 1.17 
Changelog: https://github.com/samtools/htslib/releases/tag/1.17
 2023-04-12 12:00:02 +02:00