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Author SHA1 Message Date
Serge K 1248ea16e1
colmap: fix for cuda11.6/gcc11 (#169623) 
* colmap: force nvcc std=c++14 after gcc11 bump

* colmap: optional -> optionals

* colmap: sha256 -> hash

* colmapWithCuda: force CUDA_ENABLED=ON safeguard

* colmapWithCuda: add opengl runpath
 2022-04-27 16:09:30 -07:00
Ryan Mulligan f05a748058
Merge pull request #169246 from r-ryantm/auto-update/bada-bib 
bada-bib: 0.6.1 -> 0.6.2
 2022-04-24 13:58:11 -07:00
veprbl 2511bad8aa
Merge pull request #168973 from veprbl/pr/root5_glibc_fix 
root5: fix for glibc
 2022-04-19 14:56:09 -04:00
R. Ryantm 9919952421 bada-bib: 0.6.1 -> 0.6.2 2022-04-19 00:53:01 +00:00
Dmitry Kalinkin 81f9e28844
root5: fix for glibc 2022-04-16 17:20:16 -04:00
Fabián Heredia Montiel 5275050ab0 fityk: add -std=c++11 flag for gcc11 and later 2022-04-16 11:11:46 -05:00
github-actions[bot] bf63dd7434
Merge staging-next into staging 2022-04-10 18:01:38 +00:00
Lassulus 973fa1917c
Merge pull request #162300 from r-ryantm/auto-update/cwltool 
cwltool: 3.1.20220221074232 -> 3.1.20220224085855
 2022-04-10 13:37:54 +01:00
Martin Weinelt bf1914e12a Merge remote-tracking branch 'origin/staging-next' into staging 2022-04-05 04:05:02 +02:00
Ryan Mulligan b56cf0ed6a
Merge pull request #167069 from r-ryantm/auto-update/bada-bib 
bada-bib: 0.6.0 -> 0.6.1
 2022-04-04 13:51:15 -07:00
Martin Weinelt f95a3d1140 Merge remote-tracking branch 'origin/staging-next' into staging 2022-04-04 00:46:25 +02:00
R. Ryantm 2a5b81d50f bada-bib: 0.6.0 -> 0.6.1 2022-04-03 19:11:54 +00:00
ajs124 f9ad6fb744 openmvs: remove after being marked broken for over two years 
It was marked in commit 796050fedd by Michael Raskin on 2019-04-14 (commited on 2019-04-14)
 2022-04-03 16:14:19 +01:00
github-actions[bot] 9aa014c46a
Merge staging-next into staging 2022-03-31 12:02:10 +00:00
R. Ryantm 53dff2f7c8 rink: 0.6.2 -> 0.6.3 2022-03-28 18:13:37 +00:00
github-actions[bot] 8357b101a5
Merge staging-next into staging 2022-03-25 12:02:05 +00:00
davidak 6ea8d5ee71
Merge pull request #165297 from Stunkymonkey/treewide-pname-version-17 
treewide: rename name to pname&version
 2022-03-24 16:38:33 +01:00
Doron Behar 4a02c56a7d
Merge pull request #164746 from ncfavier/makeWrapper-chdir 2022-03-24 13:51:27 +02:00
Felix Buehler 3bc5196252 treewide: rename name to pname&version 2022-03-23 22:55:50 +01:00
Millian Poquet 9ff032c291 simgrid: 3.30 -> 3.31 
- addition of the optional eigen dependency, used by a new simulation
  model (bmf) that looks very promising to take interference phenomena
  into account while remaining coarse-grained.
- enabled the new dependency by default as I think this is interesting
  for most users.
 2022-03-22 14:52:22 +01:00
Armeen Mahdian 858e03cf1f golly-beta: remove 
Golly is more up to date
 2022-03-21 07:08:53 -05:00
Naïm Favier 9160044f5f
treewide/makeWrapper: replace --run cd with --chdir 
Lay the groundwork for switching to binary wrappers by reducing uses
of `--run` (which is not supported by `makeBinaryWrapper`).
 2022-03-19 09:46:31 +01:00
Rasmus Thomsen 69895c6248
bada-bib: 0.5.1 -> 0.6.0 2022-03-15 12:50:26 +01:00
Dmitry Kalinkin 149d68268d
root: fix ROOTConfig.cmake.in patching 2022-03-04 21:04:19 -05:00
R. Ryantm de0ff65232 cwltool: 3.1.20220221074232 -> 3.1.20220224085855 2022-03-01 03:46:50 +00:00
K900 cb2cfba6f7 treewide: switch all desktop file generators to new API 
Notably:
- remove explicit arguments that match the defaults
- convert everything to the right Nix types
 2022-02-25 13:40:38 -08:00
R. Ryantm d6a24fc108 cwltool: 3.1.20220217222804 -> 3.1.20220221074232 2022-02-24 15:52:49 -05:00
Bobby Rong 93883402a4
Merge pull request #160594 from Cogitri/bada-bib 
bada-bib: 0.4.1 -> 0.5.1
 2022-02-22 12:10:40 +08:00
Rasmus Thomsen 87c1d9f92c
bada-bib: 0.4.1 -> 0.5.1 2022-02-21 16:33:50 +01:00
R. Ryantm c35aa0a0f3 cwltool: 3.1.20220217190813 -> 3.1.20220217222804 2022-02-21 01:31:33 -05:00
Millian Poquet bc2604732e simgrid: mark as broken on darwin 2022-02-19 10:05:17 +01:00
Millian Poquet 3f804f68bc simgrid: 3.28 -> 3.30 + python + clean 
- use latest SimGrid release
- enable the python binding (in new output "python")
- reviews from PR 141040 have been applied
 2022-02-19 10:05:12 +01:00
R. Ryantm b715fcd9d9 cwltool: 3.1.20220210171524 -> 3.1.20220217190813 2022-02-18 00:36:37 -05:00
R. RyanTM ac1c96ecec
colmap: 3.6 -> 3.7 
* colmap: 3.6 -> 3.7 (#159198)

* colmap: license is BSD-3-Clause

Co-authored-by: Renaud <c0bw3b@users.noreply.github.com>
 2022-02-18 00:29:14 +01:00
Daniel Wheeler 4befe7a89f
snakemake: 6.10.0 -> 6.15.5 (#159026) 
Fetch from GitHub rather than PyPI so tests are included.
 2022-02-17 18:06:23 -05:00
Zhong Jianxin e8f3914985 treewide: Replace transfig with fig2dev 
Reasons:

- transfig never get upstream update since it was added to nixpkgs 2006,
  according to [fig2dev Debian changelog][1], upstream maintainership
  was taken over at 2016, and renamed to fig2dev.

- [Debian][2], [ArchLinux][3], [HomeBrew][4] all use fig2dev to replace
  transfig.

- transfig builds [failed][5] on aarch64-darwin, fig2dev builds fine.

- One less package to maintain.

[1]: https://salsa.debian.org/debian/fig2dev/-/blob/debian/1%253.2.6_beta-1/debian/changelog
[2]: https://packages.debian.org/bullseye/transfig
[3]: https://archlinux.org/packages/community/x86_64/fig2dev/
[4]: https://formulae.brew.sh/formula/fig2dev
[5]: https://hydra.nixos.org/build/163404782/nixlog/2
 2022-02-15 10:13:56 +08:00
R. Ryantm 2220d35562 bada-bib: 0.3.0 -> 0.4.1 2022-02-12 22:22:46 -08:00
R. Ryantm 24b505484b cytoscape: 3.9.0 -> 3.9.1 2022-02-12 21:13:11 -08:00
R. Ryantm 1631ffae8d cwltool: 3.1.20220204090313 -> 3.1.20220210171524 2022-02-11 12:44:06 -05:00
R. RyanTM 1bfc1730e1
cwltool: 3.1.20220202173120 -> 3.1.20220204090313 (#158272) 2022-02-05 15:14:21 -05:00
Sandro 63a6539b76
Merge pull request #157198 from afontaine/afontaine/correct-fah-shortcuts 2022-02-04 18:26:20 +01:00
R. Ryantm af3af2df32 cwltool: 3.1.20220124184855 -> 3.1.20220202173120 2022-02-03 20:06:12 -05:00
markuskowa 65bc2de0ef
Merge pull request #152447 from Cogitri/bada-bib 
bada-bib: init at 0.3.0
 2022-02-01 22:26:26 +01:00
Robert Schütz a13fe11c59 sasview: 4.2.0 -> 5.0.4 2022-01-30 20:47:10 +00:00
Andrew Fontaine 3c0680b783
fahviewer: fix variable substitution for shortcut 
Because single quotes are used in the sed command, the application
shortcut had the literal $out instead of the package path.
 2022-01-28 16:47:24 -05:00
Andrew Fontaine ba785adb28
fahcontrol: fix variable substitution for shortcut 
Because single quotes are used in the sed command, the application
shortcut had the literal $out instead of the package path.
 2022-01-28 16:46:52 -05:00
Yipeng Sun 54cbee8d97
root: tweak wrapping flags for auxiliary programs, avoid forcing CMAKE_CXX_STANDARD (#157069) 2022-01-27 19:37:36 -05:00
Sandro 27cccd4e49
Merge pull request #151363 from Stunkymonkey/doc-updateWalker 2022-01-27 14:06:36 +01:00
ajs124 3638ca8be6
Merge pull request #156001 from helsinki-systems/upd/tulip 
tulip: 5.2.1 -> 5.6.1
 2022-01-26 23:33:44 +01:00
Felix Buehler ed7bf9452c treewide: remove *.upstream files from updateWalker 2022-01-26 21:46:07 +01:00