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104 commits

Author SHA1 Message Date
Justin Bedo 6675a16146
rPackages: CRAN and BioC update 2022-04-11 11:31:14 +10:00
Justin Bedo f67c61e0d5
rPackages: CRAN and BioC update 2022-03-11 09:32:17 +11:00
Justin Bedo 763671ce96
rPackages: CRAN and BioC update 2022-02-09 10:25:30 +11:00
Justin Bedo dc636edd74
rPackages: CRAN and BioC update 2022-02-01 21:38:19 +11:00
Justin Bedo 18b3b8e2a7
rPackages: CRAN and BioC update 2022-01-06 08:27:03 +11:00
Justin Bedo 02c59ff6e0
rPackages: CRAN and BioC update 2021-12-09 09:20:47 +11:00
Justin Bedo b9adefed54
rPackages: CRAN and BioC update 2021-12-01 13:13:40 +11:00
Justin Bedo 31eccf77fd
rPackages: CRAN and BioC update 2021-11-15 22:12:32 +11:00
Justin Bedo 20de18c0a6
rPackages: CRAN and BioC update 2021-11-07 08:28:17 +11:00
Justin Bedo 3c6769b975
rPackages: CRAN and BioC update 2021-11-02 17:49:26 +11:00
Justin Bedo 7f8ec07897
rPackages: update CRAN and BIOC package sets 2021-10-22 14:35:36 +11:00
Justin Bedo f9067c45f1
rPackages: update package set 2021-09-27 18:14:08 +10:00
Phil Dyer d7ac07cdbb r-modules: fix r package build failures 
r-modules: fix r package system dependencies

r-modules: fix terra package dependencies

r-modules: fix edge case for R package import

The R package "import" has a name that clashes
with the nix function "import". The package
name in nixpkgs is correctly modified to
avoid the clash, but the name of the
R package was also being changed in
cran-packages.nix, which broke downloading
of the package.

cran-packages.nix has been manually patched,
and genreate-r-packages.R has been fixed so
future automatic updates will succeed.

r-modules: fix repeated `pkgs.` and svglite
 2021-08-24 09:11:14 +10:00
Jake Gillberg 0ec4668924 run generate-r-packages.R (cran and bioc*) 2021-05-06 11:27:08 -04:00
Jake Gillberg f695a3eb1c bump cran 2021-05-05 12:56:44 -04:00
Peter Simons c4d8bd324f r-arrow: update the library to version 3.0.0 to match the version of arrow-cpp 
See https://github.com/NixOS/nixpkgs/issues/81761 for further details.
 2021-02-16 12:47:21 +01:00
Tikhon Jelvis 70cd2cb336 r-modules: update cran and bioc packages 
The last snapshot was 4 months ago (2020-08-19). I also found that I needed newer definitions when I was trying to fix the R arrow package.

This update required a couple of manual changes:

  1. Removing a few deleted packages from default.nix
  2. Renaming the "assert" package to "r_assert" in generate-r-packages.R because "assert" is a keyword in Nix
 2021-01-02 15:03:06 -08:00
Justin Bedo 6bec22ee40
r-modules: bioc and cran update 2020-08-20 16:46:22 +10:00
Alex Branham cb1a13ad98
R: Update CRAN and bioconductor packages 2020-04-26 17:16:34 -04:00
Alex Branham f5afc20d06
R: Update CRAN and bioconductor packages 2020-04-08 10:01:19 -04:00
Maximilian Bosch 3c525b702a
r-packages: update 
This update was primarily done to update rPackages.V8 to 3.0 which
doesn't depend on an ancient version of v8 anymore.

Also dropped the `-lv8_libplatform` linker flag. It seems as this now
part of `v8.so` as `v8_libplatform.so` doesn't exist anymore on recent
v8 versions in nixpkgs, but the headers are still there and there aren't
any "undefined reference to" errors while linking.
 2020-01-28 20:11:00 +01:00
Alex Branham e206c37550
R: Update CRAN and bioconductor packages 2020-01-23 21:22:55 -05:00
Alex Branham b9a558aaa4 R: Update CRAN and bioconductor packages 
Closes https://github.com/NixOS/nixpkgs/pull/75010.
 2019-12-16 18:56:49 +01:00
Alex Branham 24f0ef530e R: Update CRAN and bioconductor packages 2019-10-06 14:38:07 +02:00
Alex Branham eab786451f
R: Update CRAN and bioconductor packages 2019-08-06 08:49:39 -05:00
Alex Branham 46bca1d643
R: Update CRAN and bioconductor packages 2019-07-02 15:48:06 -05:00
Alex Branham 0a80d3dc82 R: update CRAN and Bioconductor package sets 
Closes https://github.com/NixOS/nixpkgs/pull/59186.
 2019-04-11 20:37:18 +02:00
Alex Branham 8dcba2b842 R: update CRAN and Bioconductor package sets 
Closes https://github.com/NixOS/nixpkgs/pull/57423.
 2019-03-14 19:50:37 +01:00
Alex Branham ec03ed450c update R package set 
Closes https://github.com/NixOS/nixpkgs/pull/55462.
 2019-02-10 11:16:19 +01:00
Alex Branham 48541ab6b9 R: update CRAN and BIOC package sets 
Closes https://github.com/NixOS/nixpkgs/pull/53414.
 2019-01-08 09:34:37 +01:00
Alex Branham 6f7459b40b
R: update CRAN package set 2018-12-12 11:17:25 -06:00
Tom McLaughlin cac5c9401e R: update CRAN and BIOC package sets 
Closes https://github.com/NixOS/nixpkgs/pull/49430.
 2018-11-02 17:50:18 +01:00
Peter Simons 49c649d573 R: update CRAN package set to snapshot 2018-07-06 2018-07-07 12:10:46 +02:00
Peter Simons d984656a2a R: update package set 
The CRAN snapshot is at "2018-07-03". Bioc is now at 3.8.
 2018-07-07 12:10:46 +02:00
Peter Simons 94295e3cee R: update CRAN and BIOC package sets 2018-04-24 09:19:38 +02:00
Peter Simons 52dce0fb38 R: update the CRAN and BIOC package sets 2018-03-15 19:39:55 +01:00
Justin Bedo cfc07bcf0e
bioconductor: 3.4 -> 3.6 2018-02-21 09:58:17 +11:00
Peter Simons 65b15c40f1 R: update package set 2017-12-01 13:48:26 +01:00
Peter Simons 11131d5fc1 R: update package set 2017-09-29 15:21:09 +02:00
Peter Simons aa9bebf261 R: update package set 2017-08-31 21:59:06 +02:00
Peter Simons b1ebe7a72c r-modules: update package set 2017-07-02 09:51:42 +02:00
Peter Simons 430cbcfd2b R: update CRAN and BIOC package sets 2017-04-24 15:39:08 +02:00
Peter Simons add394d8f1 r-modules: update CRAN package set 2017-03-07 14:56:46 +01:00
Justin Bedo 4bb8727284
R: 3.2.4 -> 3.3.2 2017-02-24 15:22:12 +11:00
Jeffrey David Johnson 2ceec79ad5 work on fixing up bioconductor packages 2016-03-31 16:16:34 -07:00
Jeffrey David Johnson 66bcbfb93d r-modules: update CRAN, add Bioconductor data pkgs 2016-03-22 22:50:54 -07:00
Michel Kuhlmann 4c3d76d3c8 r-modules: regenerate CRAN packages 2016-01-04 09:19:24 +01:00
Nikolay Amiantov bd4297dc4d r-modules: regenerate CRAN, BIOC and IRKernel 2015-11-25 11:39:28 +01:00
Michel Kuhlmann cab1f3de5e R: regenerate CRAN packages 2015-11-17 14:34:27 +01:00
Karn Kallio 94629aa57d R: regenerate CRAN and BIOC packages 2015-10-04 20:06:49 +02:00