74 lines
2.2 KiB
Nix
74 lines
2.2 KiB
Nix
{ lib, stdenv, fetchFromGitHub, stanc, python3, buildPackages, runtimeShell }:
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stdenv.mkDerivation rec {
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pname = "cmdstan";
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version = "2.31.0";
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src = fetchFromGitHub {
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owner = "stan-dev";
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repo = pname;
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rev = "v${version}";
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fetchSubmodules = true;
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sha256 = "sha256-Uh/ZhEnbhQwC8xGFjDzH9No3VRgVbHYk2KoC+e3YhJw=";
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};
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nativeBuildInputs = [ stanc ];
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buildFlags = [ "build" ];
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enableParallelBuilding = true;
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doCheck = true;
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checkInputs = [ python3 ];
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CXXFLAGS = lib.optionalString stdenv.isDarwin "-D_BOOST_LGAMMA";
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postPatch = ''
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substituteInPlace stan/lib/stan_math/make/libraries \
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--replace "/usr/bin/env bash" "bash"
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patchShebangs .
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'' + lib.optionalString stdenv.isAarch64 ''
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sed -z -i "s/TEST(CommandStansummary, check_console_output).*TEST(CommandStansummary, check_csv_output)/TEST(CommandStansummary, check_csv_output)/" \
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src/test/interface/stansummary_test.cpp
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'';
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preConfigure = ''
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mkdir -p bin
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ln -s ${buildPackages.stanc}/bin/stanc bin/stanc
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'';
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makeFlags = lib.optional stdenv.isDarwin "arch=${stdenv.hostPlatform.darwinArch}";
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checkPhase = ''
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./runCmdStanTests.py -j$NIX_BUILD_CORES src/test/interface
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'';
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installPhase = ''
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mkdir -p $out/opt $out/bin
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cp -r . $out/opt/cmdstan
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ln -s $out/opt/cmdstan/bin/stanc $out/bin/stanc
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ln -s $out/opt/cmdstan/bin/stansummary $out/bin/stansummary
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cat > $out/bin/stan <<EOF
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#!${runtimeShell}
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make -C $out/opt/cmdstan "\$(realpath "\$1")"
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EOF
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chmod a+x $out/bin/stan
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'';
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# Hack to ensure that patchelf --shrink-rpath get rids of a $TMPDIR reference.
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preFixup = "rm -rf stan";
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meta = with lib; {
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description = "Command-line interface to Stan";
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longDescription = ''
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Stan is a probabilistic programming language implementing full Bayesian
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statistical inference with MCMC sampling (NUTS, HMC), approximate Bayesian
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inference with Variational inference (ADVI) and penalized maximum
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likelihood estimation with Optimization (L-BFGS).
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'';
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homepage = "https://mc-stan.org/interfaces/cmdstan.html";
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license = licenses.bsd3;
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maintainers = with maintainers; [ wegank ];
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platforms = platforms.unix;
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};
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}
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