nixpkgs/pkgs/development/python-modules/pyfaidx/default.nix
2022-07-27 03:00:10 +00:00

53 lines
982 B
Nix

{ lib
, buildPythonPackage
, fetchPypi
, nose
, numpy
, setuptools-scm
, six
, glibcLocales
, pytestCheckHook
}:
buildPythonPackage rec {
pname = "pyfaidx";
version = "0.7.1";
format = "setuptools";
src = fetchPypi {
inherit pname version;
sha256 = "sha256-OXdjK3/SkEn4sRA11+neoOLF2pwjX5grTD+uBv8foj8=";
};
nativeBuildInputs = [
setuptools-scm
];
propagatedBuildInputs = [
six
];
checkInputs = [
glibcLocales
nose
numpy
pytestCheckHook
];
disabledTestPaths = [
# FileNotFoundError: [Errno 2] No such file or directory: 'data/genes.fasta.gz'
"tests/test_Fasta_bgzip.py"
];
pythonImportsCheck = [
"pyfaidx"
];
meta = with lib; {
homepage = "https://github.com/mdshw5/pyfaidx";
description = "Python classes for indexing, retrieval, and in-place modification of FASTA files using a samtools compatible index";
license = licenses.bsd3;
maintainers = with maintainers; [ jbedo ];
};
}