62 lines
1.2 KiB
Nix
62 lines
1.2 KiB
Nix
{ lib
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, fetchFromGitHub
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, buildPythonPackage
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, pythonOlder
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, numpy
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, cython
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, zlib
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, python-lzo
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, nose
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}:
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buildPythonPackage rec {
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pname = "bx-python";
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version = "0.10.0";
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format = "setuptools";
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disabled = pythonOlder "3.7";
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src = fetchFromGitHub {
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owner = "bxlab";
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repo = "bx-python";
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rev = "refs/tags/v${version}";
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hash = "sha256-j2GKj2IGDBk4LBnISRx6ZW/lh5VSdQBasC0gCRj0Fiw=";
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};
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nativeBuildInputs = [
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cython
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];
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buildInputs = [
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zlib
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];
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propagatedBuildInputs = [
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numpy
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python-lzo
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];
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nativeCheckInputs = [
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nose
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];
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postInstall = ''
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cp -r scripts/* $out/bin
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# This is a small hack; the test suite uses the scripts which need to
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# be patched. Linking the patched scripts in $out back to the
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# working directory allows the tests to run
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rm -rf scripts
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ln -s $out/bin scripts
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'';
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meta = with lib; {
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description = "Tools for manipulating biological data, particularly multiple sequence alignments";
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homepage = "https://github.com/bxlab/bx-python";
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changelog = "https://github.com/bxlab/bx-python/releases/tag/v${version}";
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license = licenses.mit;
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maintainers = with maintainers; [ jbedo ];
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platforms = [ "x86_64-linux" ];
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};
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}
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