65 lines
1.8 KiB
Nix
65 lines
1.8 KiB
Nix
{ lib
|
|
, buildPythonPackage
|
|
, fetchpatch
|
|
, cython
|
|
, numpy
|
|
, pytestCheckHook
|
|
, scipy
|
|
, scikit-learn
|
|
, fetchPypi
|
|
, joblib
|
|
, six
|
|
, pythonRelaxDepsHook
|
|
}:
|
|
|
|
buildPythonPackage rec {
|
|
pname = "hdbscan";
|
|
version = "0.8.28";
|
|
|
|
src = fetchPypi {
|
|
inherit pname version;
|
|
hash = "sha256-7tr3Hy87vt/Ew42hrUiXRUzl69R5LhponJecKFPtwFo=";
|
|
};
|
|
patches = [
|
|
# should be included in next release
|
|
(fetchpatch {
|
|
name = "joblib-1.2.0-compat.patch";
|
|
url = "https://github.com/scikit-learn-contrib/hdbscan/commit/d829c639923f6866e1917e46ddbde45b513913f3.patch";
|
|
excludes = [
|
|
"docs/basic_hdbscan.rst"
|
|
"docs/how_hdbscan_works.rst"
|
|
];
|
|
hash = "sha256-t0D4OsHEcMwmBZM8Mk1N0uAKi6ra+TOzEks9/efsvWI=";
|
|
})
|
|
];
|
|
|
|
pythonRemoveDeps = [ "cython" ];
|
|
nativeBuildInputs = [ pythonRelaxDepsHook cython ];
|
|
propagatedBuildInputs = [ numpy scipy scikit-learn joblib six ];
|
|
preCheck = ''
|
|
cd hdbscan/tests
|
|
rm __init__.py
|
|
'';
|
|
nativeCheckInputs = [ pytestCheckHook ];
|
|
disabledTests = [
|
|
# known flaky tests: https://github.com/scikit-learn-contrib/hdbscan/issues/420
|
|
"test_mem_vec_diff_clusters"
|
|
"test_all_points_mem_vec_diff_clusters"
|
|
"test_approx_predict_diff_clusters"
|
|
# another flaky test https://github.com/scikit-learn-contrib/hdbscan/issues/421
|
|
"test_hdbscan_boruvka_balltree_matches"
|
|
# more flaky tests https://github.com/scikit-learn-contrib/hdbscan/issues/570
|
|
"test_hdbscan_boruvka_balltree"
|
|
"test_hdbscan_best_balltree_metric"
|
|
];
|
|
|
|
pythonImportsCheck = [ "hdbscan" ];
|
|
|
|
meta = with lib; {
|
|
description = "Hierarchical Density-Based Spatial Clustering of Applications with Noise, a clustering algorithm with a scikit-learn compatible API";
|
|
homepage = "https://github.com/scikit-learn-contrib/hdbscan";
|
|
license = licenses.bsd3;
|
|
maintainers = with maintainers; [ ixxie ];
|
|
};
|
|
}
|