92 lines
1.5 KiB
Nix
92 lines
1.5 KiB
Nix
{ lib
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, buildPythonPackage
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, fetchPypi
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, pythonOlder
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, hatchling
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, hatch-vcs
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, numpy
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, packaging
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, importlib-resources
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, pydicom
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, pillow
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, h5py
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, scipy
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, git
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, pytest-doctestplus
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, pytest-httpserver
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, pytest-xdist
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, pytestCheckHook
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}:
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buildPythonPackage rec {
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pname = "nibabel";
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version = "5.1.0";
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format = "pyproject";
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disabled = pythonOlder "3.8";
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src = fetchPypi {
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inherit pname version;
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hash = "sha256-znPKXpVyCechmiI8tx93I1yd8qz00/J/hhujjpSBrFM=";
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};
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nativeBuildInputs = [
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hatchling
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hatch-vcs
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];
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propagatedBuildInputs = [
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numpy
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packaging
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] ++ lib.optionals (pythonOlder "3.9") [
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importlib-resources
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];
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passthru.optional-dependencies = rec {
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all = dicom
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++ dicomfs
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++ minc2
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++ spm
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++ zstd;
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dicom = [
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pydicom
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];
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dicomfs = [
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pillow
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] ++ dicom;
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minc2 = [
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h5py
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];
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spm = [
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scipy
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];
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zstd = [
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# TODO: pyzstd
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];
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};
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nativeCheckInputs = [
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git
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pytest-doctestplus
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pytest-httpserver
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pytest-xdist
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pytestCheckHook
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] ++ passthru.optional-dependencies.all;
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preCheck = ''
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export PATH=$out/bin:$PATH
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'';
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disabledTests = [
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# https://github.com/nipy/nibabel/issues/951
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"test_filenames"
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];
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meta = with lib; {
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homepage = "https://nipy.org/nibabel";
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description = "Access a multitude of neuroimaging data formats";
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license = licenses.mit;
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maintainers = with maintainers; [ ashgillman ];
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};
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}
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