bf9ab6107e
We have to regenerate the Cython C files for Python 3.11 compatibility. This is a nice thing to be doing anyway, from a bootstrappability point of view. Link: https://github.com/nipy/nipy/issues/496#issuecomment-1382736563
56 lines
1.5 KiB
Nix
56 lines
1.5 KiB
Nix
{ lib
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, buildPythonPackage
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, fetchPypi
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, pythonOlder
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, cython
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, nose
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, matplotlib
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, nibabel
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, numpy
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, scipy
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, sympy
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, python
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}:
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buildPythonPackage rec {
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version = "0.5.0";
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pname = "nipy";
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disabled = pythonOlder "2.6";
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src = fetchPypi {
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inherit pname version;
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sha256 = "a8a2c97ce854fece4aced5a6394b9fdca5846150ad6d2a36b86590924af3c848";
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};
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nativeBuildInputs = [ cython ];
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buildInputs = lib.optionals doCheck [ nose ];
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propagatedBuildInputs = [ matplotlib nibabel numpy scipy sympy ];
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preBuild = ''
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make recythonize
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'';
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checkPhase = '' # wants to be run in a different directory
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mkdir nosetests
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cd nosetests
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${python.interpreter} -c "import nipy; nipy.test()"
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rm -rf .
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'';
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# failing test:
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# nipy.algorithms.statistics.models.tests.test_olsR.test_results(11.593139639404727, 11.593140144880794, 6) # disagrees by 1 at 6th decimal place
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# erroring tests:
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# nipy.modalities.fmri.fmristat.tests.test_FIAC.test_altprotocol
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# nipy.modalities.fmri.fmristat.tests.test_FIAC.test_agreement
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# nipy.tests.test_scripts.test_nipy_4d_realign # because `nipy_4d_realign` script isn't found at test time; works from nix-shell, so could be patched
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# nipy.tests.test_scripts.test_nipy_3_4d # ditto re.: `nipy_3_4d` script
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doCheck = false;
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meta = with lib; {
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homepage = "https://nipy.org/nipy";
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description = "Software for structural and functional neuroimaging analysis";
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license = licenses.bsd3;
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};
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}
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