102 lines
2.7 KiB
Nix
102 lines
2.7 KiB
Nix
{ lib
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, buildPythonPackage
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, fetchFromGitHub
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, fetchpatch
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, keras
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, numba
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, numpy
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, pynndescent
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, pytestCheckHook
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, pythonOlder
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, scikit-learn
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, scipy
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, tensorflow
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, tqdm
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}:
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buildPythonPackage rec {
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pname = "umap-learn";
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version = "0.5.3";
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format = "setuptools";
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disabled = pythonOlder "3.7";
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src = fetchFromGitHub {
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owner = "lmcinnes";
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repo = "umap";
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rev = version;
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hash = "sha256-S2+k7Ec4AxsN6d0GUGnU81oLnBgmlZp8OmUFCNaUJYw=";
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};
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patches = [
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# Fix tests with sklearn>=1.2.0
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(fetchpatch {
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url = "https://github.com/lmcinnes/umap/commit/a714b59bd9e2ca2e63312bc3491b2b037a42f2f2.patch";
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hash = "sha256-WOSWNN5ewVTV7IEBEA7ZzgZYMZxctF1jAWs9ylKTyLs=";
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})
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(fetchpatch {
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url = "https://github.com/lmcinnes/umap/commit/c7d05683325589ad432a55e109cacb9d631cfaa9.patch";
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hash = "sha256-hE2Svxf7Uja+DbCmTDCnd7mZynjNbC5GUjfqg4ZRO9Y=";
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})
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(fetchpatch {
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url = "https://github.com/lmcinnes/umap/commit/949abd082524fce8c45dfb147bcd8e8ef49eade3.patch";
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hash = "sha256-8/1k8iYeF77FIaUApNtY07auPJkrt3vNRR/HTYRvq+0=";
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})
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# Fix tests with numpy>=1.24
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# https://github.com/lmcinnes/umap/pull/952
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(fetchpatch {
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url = "https://github.com/lmcinnes/umap/commit/588e1f724c9f5de528eb1500b0c85a1a609fe947.patch";
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hash = "sha256-B50eyMs3CRuzOAq+jxz56XMJPdiUofUxCL0Vqolaafo=";
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})
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# https://github.com/lmcinnes/umap/pull/1010
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(fetchpatch {
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url = "https://github.com/lmcinnes/umap/commit/848396c762c894e666aaf3d0bcfe1e041b529ea6.patch";
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hash = "sha256-ir0Pxfr2c0oSuFGXQqHjkj7nzvlpTXCYbaI9qAiLun0=";
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})
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(fetchpatch {
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url = "https://github.com/lmcinnes/umap/commit/30e39938f4627f327223245dfe2c908af6b7e304.patch";
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hash = "sha256-7Divrym05wIPa7evgrNYXGm44/EOWG8sIYV8fmtuzJ4=";
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})
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];
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propagatedBuildInputs = [
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numba
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numpy
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pynndescent
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scikit-learn
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scipy
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tqdm
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];
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nativeCheckInputs = [
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keras
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pytestCheckHook
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tensorflow
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];
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preCheck = ''
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export HOME=$TMPDIR
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'';
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disabledTests = [
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# Plot functionality requires additional packages.
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# These test also fail with 'RuntimeError: cannot cache function' error.
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"test_umap_plot_testability"
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"test_plot_runs_at_all"
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# Flaky test. Fails with AssertionError sometimes.
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"test_sparse_hellinger"
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"test_densmap_trustworthiness_on_iris_supervised"
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# tensorflow maybe incompatible? https://github.com/lmcinnes/umap/issues/821
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"test_save_load"
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];
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meta = with lib; {
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description = "Uniform Manifold Approximation and Projection";
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homepage = "https://github.com/lmcinnes/umap";
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license = licenses.bsd3;
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maintainers = with maintainers; [ ];
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};
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}
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