Sandro
9fd6278214
Merge pull request #173992 from trofi/workaround-fno-common-for-mni_autoreg
...
mni_autoreg: pull upstream workaround for -fno-common toolchains
2022-05-25 00:26:12 +02:00
Bobby Rong
d1c457d050
Merge pull request #173942 from lopsided98/qgroundcontrol-update
...
qgroundcontrol: 4.2.0 -> 4.2.1
2022-05-24 21:43:19 +08:00
Yorick van Pelt
0924b1863c
picoscope, openrazer, it87, esptool: move maintainership to LumiGuide
...
I no longer work there, but I inherited a few package maintainerships.
2022-05-24 12:16:25 +02:00
Sergei Trofimovich
8cba3775d8
paml: add -fcommon workaround
...
Workaround build failure on -fno-common toolchains like upstream
gcc-10. Otherwise build fails as:
ld: /build/ccKomtcd.o:(.bss+0x4544): multiple definition of `SeqTypes';
/build/ccx7EsgU.o:(.bss+0x2a0dfdc): first defined here
2022-05-22 20:23:12 +01:00
github-actions[bot]
107b6041bc
Merge master into staging-next
2022-05-22 18:01:20 +00:00
ajs124
7d66e93927
Merge pull request #173402 from imsofi/update/geogebra
...
geogebra: 5-0-680-0 -> 5-0-706-0
2022-05-22 16:14:06 +02:00
Sergei Trofimovich
94a5ae4f91
mni_autoreg: pull upstream workaround for -fno-common toolchains
...
Without the change build fails on upstream gcc-10 as:
ld: lib_minctracc.a(minctracclib.c.o):(.bss+0x78): multiple definition of
`prog_name'; CMakeFiles/xfm2param.dir/Extra_progs/xfm2param.c.o:(.bss+0x18): first defined here
2022-05-22 14:37:30 +01:00
Sofi
382f65bd30
geogebra: 5-0-680-0 -> 5-0-706-0
2022-05-22 15:04:08 +02:00
github-actions[bot]
deef19c9a1
Merge master into staging-next
2022-05-22 06:01:27 +00:00
Bobby Rong
3b468e68b7
Merge pull request #173017 from trofi/workaround-fno-common-for-freebayes
...
freebayes: add -fcommon workaround
2022-05-22 13:39:14 +08:00
Ben Wolsieffer
fde16aefa7
qgroundcontrol: 4.2.0 -> 4.2.1
2022-05-21 20:51:32 -04:00
github-actions[bot]
dbef850602
Merge master into staging-next
2022-05-22 00:02:20 +00:00
Ben Siraphob
519f0b9e58
zchaff: use clangStdenv
...
Fixes build on Linux
2022-05-21 16:55:37 -07:00
Ben Siraphob
3c31489f15
Merge pull request #173933 from siraben/zchaff-init
...
zchaff: init at 2004.5.13
2022-05-21 16:26:06 -07:00
Mauricio Collares
8fdfe10bcf
lean2: 2017-07-22 -> 2018-10-01, unbreak
2022-05-21 16:06:51 -07:00
Ben Siraphob
a6aa08532c
zchaff: init at 2004.5.13
2022-05-21 15:12:08 -07:00
Justin Bedő
48a33d0bbe
Merge pull request #171597 from NixOS/r-updates
...
R 4.2.0
2022-05-22 07:20:19 +10:00
Jan Tojnar
b8b9f52393
Merge branch 'master' into staging-next
...
Conflicts:
- pkgs/applications/networking/browsers/firefox/common.nix between 318fae87c0
and f6c5761935
.
2022-05-21 17:52:39 +02:00
Sergei Trofimovich
eb0590ec3d
kssd: pull upstream fix for -fno-common tollchains
...
Without the change build fails on upstream gcc-10 as:
ld: ccD2iWhk.o:(.bss+0x8): multiple definition of `domain';
ccgA4lYl.o:(.bss+0x8): first defined here
ld: ccD2iWhk.o:(.bss+0x0): multiple definition of `long_domain';
ccgA4lYl.o:(.bss+0x0): first defined here
2022-05-21 11:22:53 +01:00
7c6f434c
91c498f0f2
Merge pull request #173543 from collares/sage-gdlib
...
sageWithDoc: clean up sagedoc.nix
2022-05-21 04:31:03 +00:00
Mauricio Collares
727e5a1473
sageWithDoc: cleanup sagedoc.nix
2022-05-20 11:03:25 -07:00
github-actions[bot]
77bded3c43
Merge master into staging-next
2022-05-20 18:02:18 +00:00
Sandro
9c03535bdd
Merge pull request #147486 from pmiddend/crystfel-init
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CrystFEL: init at 0.10.1
2022-05-20 15:01:53 +02:00
github-actions[bot]
bd83e4cf98
Merge master into staging-next
2022-05-19 12:01:54 +00:00
Sandro
ed58443645
Merge pull request #173172 from Artturin/deprecatestringconf
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stdenv: start deprecating non-list configureFlags
2022-05-19 11:25:24 +02:00
Sergei Trofimovich
68f3647eae
Merge pull request #172998 from trofi/workaround-fno-common-for-eukleides
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eukleides: add -fcommon workaround
2022-05-19 07:09:54 +00:00
github-actions[bot]
17dfec3606
Merge master into staging-next
2022-05-19 00:02:14 +00:00
Mauricio Collares
21ae98f5f0
sageWithDoc: add sage-with-env to buildInputs
2022-05-18 15:53:02 -07:00
Vincent Laporte
4a87fcbc86
why3: 1.4.1 → 1.5.0
...
easycrypt: fix build with why3-1.5.0
frama-c: build with why3 1.4.1
2022-05-19 00:13:20 +02:00
Vincent Laporte
6e3a86f2f7
why3.withProvers: fix #168644
2022-05-19 00:09:30 +02:00
github-actions[bot]
925219f62b
Merge master into staging-next
2022-05-18 18:01:13 +00:00
Artturin
cf7476804a
treewide: convert string configureFlags to list of strings
2022-05-18 20:32:33 +03:00
Gabriel Ebner
cc24423641
Merge pull request #170265 from collares/lean-3.42.1
...
lean: 3.42.0 -> 3.43.0
2022-05-18 17:24:31 +02:00
Mauricio Collares
4b37f16232
lean: 3.42.1 -> 3.43.0
2022-05-18 10:30:32 -04:00
Mauricio Collares
0a449d8fff
lean: 3.42.0 -> 3.42.1
2022-05-18 10:27:18 -04:00
Shea Levy
7456be85db
Merge branch 'staging-next' into staging
2022-05-18 06:40:21 -04:00
Someone Serge
b96c7caea6
mxnet: mark cuda build as broken
2022-05-18 09:48:45 +03:00
Robert Scott
39369610f8
Merge pull request #173333 from veprbl/pr/xfitter_fix
...
xfitter: fix for gfortran10+
2022-05-17 23:02:47 +01:00
Fabian Affolter
44b8ec5ccb
Merge pull request #173416 from r-ryantm/auto-update/snakemake
...
snakemake: 7.6.2 -> 7.7.0
2022-05-17 20:39:48 +02:00
Ben Darwin
5cf446f41b
ezminc: mark broken
...
Package refuses to build with current GCC (11), but building with older
GCC causes error linking libminc and I don't want to pin a bunch of
deps.
A newer version is available upstream but it only works with ITK 5.0
(see https://github.com/BIC-MNI/EZminc/issues/15 ),
but we have 4.x and 5.2.x in tree and I'm reluctant to add 5.0 just for
one package (even ITK 4.x is only used by ants and ezminc and should be
removed as soon as ants is upgraded).
2022-05-17 10:24:07 -07:00
R. Ryantm
a52b64015a
snakemake: 7.6.2 -> 7.7.0
2022-05-17 16:18:18 +00:00
Justin Bedo
e052be0a84
Merge remote-tracking branch 'origin/master' into r-updates
2022-05-17 20:57:40 +10:00
Dmitry Kalinkin
1c78ce70fa
xfitter: fix for gfortran10+
2022-05-16 22:07:39 -04:00
Robert Scott
4f7d4241c2
Merge pull request #173279 from veprbl/pr/root5_fix
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root5: fix build with recent gcc
2022-05-16 22:18:29 +01:00
Ivar Scholten
402cfbf73c
formula: update for dotnet 6
2022-05-16 21:39:47 +02:00
Dmitry Kalinkin
fdf0806386
root5: fix build with recent gcc
2022-05-16 11:53:42 -04:00
github-actions[bot]
add75748e2
Merge staging-next into staging
2022-05-16 12:03:45 +00:00
7c6f434c
1d4c47ea08
Merge pull request #171511 from collares/sage-9.6
...
sage: 9.5 -> 9.6
2022-05-16 09:51:47 +00:00
github-actions[bot]
e2602ad62e
Merge staging-next into staging
2022-05-16 00:04:11 +00:00
Mauricio Collares
26a87ada65
sage: 9.5 -> 9.6
2022-05-15 19:23:40 -04:00
Dmitry Kalinkin
8e24a6db2e
nnpdf: init at 4.0.4
2022-05-15 16:00:00 -07:00
Mauricio Collares
10b16ea5e7
sageWithDoc: make jupyter-sphinx available for docbuild
2022-05-15 12:45:25 -04:00
Mauricio Collares
09ab2aba13
lrcalc: 1.2 -> 2.1
2022-05-15 12:45:24 -04:00
Jan Tojnar
d1b77f990f
Merge branch 'staging-next' into staging
...
Conflicts:
pkgs/applications/networking/browsers/firefox/common.nix between f6c5761935
and a373324120
.
2022-05-15 07:08:29 +02:00
Jörg Thalheim
3d4109f3a4
Merge pull request #172588 from res0Nanz/patch-1
...
wolfram-engine: fix quotes in installation script
2022-05-14 19:27:38 +01:00
AndersonTorres
91621176e0
primecount: 7.2 -> 7.3
2022-05-14 11:01:08 -03:00
AndersonTorres
d488388cfc
primesieve: 7.8 -> 7.9
2022-05-14 10:56:13 -03:00
Sergei Trofimovich
0b3eecc56f
gerbv: pull fix pending upstream inclusion for -fno-common toolchains
...
Without the change build fails on upstream gcc-10 as:
ld: interface.o:/build/gerbv/src/callbacks.h:50: multiple definition of
`toggle_layer'; callbacks.o:/build/gerbv/src/callbacks.h:50: first defined here
ld: interface.o:/build/gerbv/src/callbacks.h:44: multiple definition of
`CALLBACKS_SAVE_FILE_TYPE'; callbacks.o:/build/gerbv/src/callbacks.h:44: first defined here
ld: render.o:/build/gerbv/src/callbacks.h:44: multiple definition of
`CALLBACKS_SAVE_FILE_TYPE'; callbacks.o:/build/gerbv/src/callbacks.h:44: first defined here
2022-05-14 13:41:11 +01:00
Sergei Trofimovich
deaab56289
freebayes: add -fcommon workaround
...
Workaround build failure on -fno-common toolchains like upstream
gcc-10. Otherwise build fails as:
ld: foomatic_rip-options.o:/build/foomatic-filters-4.0.17/options.c:49: multiple definition of `cupsfilter';
foomatic_rip-foomaticrip.o:/build/foomatic-filters-4.0.17/foomaticrip.c:158: first defined here
2022-05-14 13:19:17 +01:00
Sergei Trofimovich
d45dfee2d6
eukleides: add -fcommon workaround
...
Workaround build failure on -fno-common toolchains like upstream
gcc-10. Otherwise build fails as:
ld: eukleides_build/triangle.o:(.bss+0x28): multiple definition of `A';
eukleides_build/quadrilateral.o:(.bss+0x18): first defined here
2022-05-14 10:28:22 +01:00
tomberek
ca885c3ac1
Merge pull request #172933 from armeenm/bump-alliance
...
alliance: unstable-2021-09-15 -> unstable-2022-01-13
2022-05-14 00:25:21 -04:00
Armeen Mahdian
d912addd5a
alliance: unstable-2021-09-15 -> unstable-2022-01-13
2022-05-13 17:18:09 -05:00
Sergei Trofimovich
ff22bc1ff6
chemtool: add -fcommon workaround
...
Workaround build failure on -fno-common toolchains like upstream
gcc-10. Otherwise build fails as:
ld: inout.o:/build/chemtool-1.6.14/ct1.h:279: multiple definition of
`outtype'; draw.o:/build/chemtool-1.6.14/ct1.h:279: first defined here
2022-05-13 21:30:28 +01:00
github-actions[bot]
fe71877bbd
Merge staging-next into staging
2022-05-13 18:03:04 +00:00
Gabriel Ebner
d04ae3049e
Merge pull request #172885 from armeenm/fix-aspino
...
aspino: 2017-03-09 -> 2018-03-24
2022-05-13 18:39:20 +02:00
markuskowa
78075c4443
Merge pull request #172868 from markuskowa/upd-molcas
...
openmolcas: 21.10 -> 22.02
2022-05-13 18:07:39 +02:00
Armeen Mahdian
f779b60d20
aspino: 2017-03-09 -> 2018-03-24
2022-05-13 10:53:37 -05:00
Markus Kowalewski
45083c5d1d
openmolcas: 21.10 -> 22.02
...
* make MPI optional instead of default
* allow optional MKL build/switch wrapped BLAS interface
2022-05-13 17:06:11 +02:00
Sandro
741d2d2578
Merge pull request #172846 from LeSuisse/bayescan-c++14-zhf
...
bayescan: fix the build
2022-05-13 17:03:05 +02:00
Guanpeng Xu
cefda1c7ca
Mathematica: refactored ( #172136 )
2022-05-13 14:16:50 +00:00
github-actions[bot]
814126147f
Merge staging-next into staging
2022-05-13 12:02:03 +00:00
Thomas Gerbet
44c1590f1f
bayescan: fix the build
...
Moved back to C++14 to avoid the new errors and warnings introduced with
C++17.
2022-05-13 12:00:08 +02:00
Philipp Middendorf
93332c2779
CrystFEL: init at 0.10.1
2022-05-13 07:09:53 +02:00
Vincent Laporte
1f11888116
Revert "coqPackages: etc"
...
This reverts commit 7e589a45ef
.
2022-05-13 06:47:14 +02:00
Vincent Laporte
215235cce5
Revert "moving findlib to propagedNativeBuildInputs"
...
This reverts commit 82440c9374
.
2022-05-13 06:47:14 +02:00
github-actions[bot]
d79af4efe4
Merge staging-next into staging
2022-05-13 00:03:35 +00:00
Thiago Kenji Okada
5c5187646d
Merge pull request #172366 from ncfavier/wrappers-cleanup
...
make{,Binary}Wrapper: some cleanups
2022-05-12 22:17:34 +01:00
Thiago Kenji Okada
eae1669de5
Merge pull request #171836 from ncfavier/escape-wrapper-args
...
Fix wrapper arguments escaping
2022-05-12 21:55:06 +01:00
Thomas Gerbet
1ba72de384
ripser: 1.0.0 -> 1.2.1
...
https://github.com/Ripser/ripser/releases/tag/v1.0.1
https://github.com/Ripser/ripser/releases/tag/v1.1
https://github.com/Ripser/ripser/releases/tag/v1.2
https://github.com/Ripser/ripser/releases/tag/v1.2.1
2022-05-12 08:26:44 -07:00
Naïm Favier
3c77d361b5
makeShellWrapper: add explicitly named attribute
...
So that things that use the makeShellWrapper/wrapProgramShell
functions can depend on makeShellWrapper explicitly, which should ease
migration in the future.
2022-05-12 11:01:23 +02:00
Thiago Kenji Okada
1919e181fb
Merge pull request #172641 from WolfangAukang/monosat-fix
...
python3Packages.monosat: disable failing tests
2022-05-12 10:01:16 +01:00
Rick van Schijndel
716bc55f98
Merge pull request #172443 from a-m-joseph/pr/zhf/vhd2vl
...
vhd2vl: fix the tests
2022-05-12 10:06:04 +02:00
Adam Joseph
5d44c9a222
vhd2vl: fix the tests
...
The testing scheme for vhd2vl is sensitive to subtle shifts in
iverilog's parenthesization choices, meaning that the golden test
outputs require constant maintenance.
The patch previously applied in order to deal with this situation is
no longer sufficient, so a patch which is sufficient has been added.
Also, the `buildTargets` and `checkTarget` attributes have been set,
so future benign failures of this sort can be dealt with through
`doCheck=false` in a pinch.
2022-05-11 23:59:59 -07:00
Cyril Cohen
82440c9374
moving findlib to propagedNativeBuildInputs
2022-05-12 06:11:43 +02:00
Cyril Cohen
7e589a45ef
coqPackages: etc
...
- use propagatedBuildInputs to make sure ocaml plugin stuff is in path
- updated coqPackage.heq (broken url)
- fixed use of `DESTDIR` and `COQMF_COQLIB` in mkCoqDerivation
- adding `COQCORELIB` environement variable to put ocaml plugin files in the right place
- make metaFetch available from `coqPackages`
2022-05-12 06:11:43 +02:00
P. R. d. O
17be6f75ce
python3Packages.monosat: disable failing tests
2022-05-11 18:29:58 -06:00
Sandro
324a5be95c
Merge pull request #172580 from collares/singular-osx
...
singular: fix darwin build
2022-05-12 01:33:52 +02:00
Yu-Chen Ding
e98f71d477
wolfram-engine: fix quotes in installation script
2022-05-12 01:29:53 +08:00
Mauricio Collares
15cf12c0ac
singular: fix darwin build
2022-05-11 12:08:20 -04:00
Markus Kowalewski
1e2065983e
octopus: 11.3 -> 11.4
2022-05-11 14:01:02 +02:00
Theodore Ni
81046b393b
bowtie: fix build on case insensitive file systems
...
Add a patch that removes the current source directory from the include
search path during compilation so that #include <version> does not end
up picking the VERSION source code file.
2022-05-11 03:20:03 -05:00
Theodore Ni
802a8416b6
bowtie: add arm64 patch to build on M1 Macs
...
This does not fix the build on Macs, but it brings the build on M1 Macs
to parity with non-M1 Macs.
2022-05-11 02:36:56 -05:00
davidak
7dd05c6052
Merge pull request #171662 from Hexadecimaaal/wolfram-engine
...
wolfram-engine: infinite loop on `WolframKernel`; `wolframscript` available in package but not installed
2022-05-11 02:53:23 +02:00
Artturi
6c7e0653c2
Merge pull request #172356 from zaninime/nanovna-zhf
...
nanovna-saver: 0.3.8 -> 0.4.0
2022-05-11 03:35:13 +03:00
Naïm Favier
62245943aa
makeWrapper,makeBinaryWrapper: introduce explicitly named functions
...
Because both versions might end up in a derivation's build inputs, it
might be useful to be able to explicitly select which function to use.
2022-05-10 22:07:56 +02:00
Mustafa Çalışkan
f24cf4422d
maintainers: change musfay to muscaln
2022-05-10 21:34:19 +03:00
Francesco Zanini
d404697e7c
nanovna-saver: 0.3.8 -> 0.4.0
2022-05-10 18:18:55 +02:00
Thiago Kenji Okada
c4956c85b4
Merge pull request #172320 from xaverdh/binary-wrapper-fixes
...
treewide: use non-binary wrapper for wrapGAppsHook where appropriate
2022-05-10 17:07:26 +01:00
Markus Kowalewski
5fd7f4ef82
molden: unbreak build, make compatible with gcc-10
2022-05-10 17:01:35 +02:00
Dominik Xaver Hörl
86e7fa945e
tlaplusToolbox: use non-binary wrapper for wrapGAppsHook
...
The use of --add-flags in this derivation does not work with binary
wrappers, which wrapGAppsHook uses since #164163 .
2022-05-10 15:13:58 +02:00
Markus Kowalewski
de869f039d
siesta: fix hardcoded path to rm
2022-05-10 12:53:22 +02:00
Lassulus
d369c0c118
Merge pull request #163869 from r-ryantm/auto-update/gurobi
...
gurobi: 9.5.0 -> 9.5.1
2022-05-10 11:46:25 +02:00
Lassulus
5ed1d2ff8f
Merge pull request #163885 from r-ryantm/auto-update/ott
...
ott: 0.31 -> 0.32
2022-05-10 11:45:47 +02:00
Artturi
6d007b2ce4
Merge pull request #172250 from Artturin/ridofnulls
...
remove some useless null asserts
2022-05-10 04:24:31 +03:00
Artturin
5007ea281d
gwyddion: remove useless nulls
2022-05-10 00:56:23 +03:00
davidak
0bc16c7f2b
Merge pull request #172182 from markuskowa/fix-siesta
...
siesta: fix build for gcc/gfortran-10/11
2022-05-09 15:16:40 +02:00
Markus Kowalewski
a5e2f0f410
siesta: fix build for gcc/gfortran-10/11
2022-05-09 14:31:16 +02:00
Sandro
c1daf2ae36
Merge pull request #170792 from grindhold/elmerfix
...
elmerfem: make elmerfem-9.0 run properly
2022-05-09 12:00:52 +02:00
grindhold
865d79bb5b
elmerfem: make elmerfem-9.0 properly
...
0) ElmerGUI displays things in the Model tree on the
left screen side again
1) Enable the import of STEP- and other opencascade-
based formats
2) Patch the source to enable builds with gcc-11
3) Build the Qt5 version instead of the Qt4 version
2022-05-09 10:41:56 +02:00
Sandro
20b3e2f83d
Merge pull request #172079 from lschuermann/dev/horizon-eda-2.3.0
...
horizon-eda: 2.2.0 -> 2.3.0
2022-05-09 01:16:46 +02:00
Sandro
5c1adf9ffd
Merge pull request #168576 from evils/kicad-unstable
2022-05-08 23:50:51 +02:00
Sandro
a0aeb0dc1e
Merge pull request #171765 from evils/kicad-6.0.5
...
kicad: 6.0.4 -> 6.0.5
2022-05-08 23:50:32 +02:00
Leon Schuermann
c353f171b9
horizon-eda: 2.2.0 -> 2.3.0
...
Signed-off-by: Leon Schuermann <leon@is.currently.online>
2022-05-08 20:57:06 +02:00
Bobby Rong
0542fa89a7
Merge pull request #171479 from tpwrules/fix-qgroundcontrol-build
...
qgroundcontrol: fix build
2022-05-08 20:26:58 +08:00
Sergei Trofimovich
428045f39b
bwa: pull upstream fix for -fno-common tollchains
...
Without the change build fails on -fno-common toolchains like upstream
gcc-10 as:
$ nix build -L --impure --expr 'with import ./. {}; bwa.overrideAttrs (oa: { NIX_CFLAGS_COMPILE = (oa.NIX_CFLAGS_COMPILE or "") + "-fno-common"; })'
...
ld: ./libbwa.a(rope.o):/build/bwa-0.7.17/rle.h:33:
multiple definition of `rle_auxtab'; ./libbwa.a(bwtindex.o):/build/bwa-0.7.17/rle.h:33: first defined here
ld: ./libbwa.a(rle.o):/build/bwa-0.7.17/rle.h:33:
multiple definition of `rle_auxtab'; ./libbwa.a(bwtindex.o):/build/bwa-0.7.17/rle.h:33: first defined here
2022-05-08 08:56:43 +01:00
R. Ryantm
5b55f851ac
snakemake: 7.6.1 -> 7.6.2
2022-05-07 16:16:09 +00:00
Hexadecimal
94c5433df2
wolfram-engine: fix wrappers
2022-05-07 10:13:57 +08:00
Naïm Favier
76f93323f2
qucs-s: fix wrapper arguments escaping
2022-05-06 18:29:50 +02:00
Evils
3592ccf6cc
kicad-unstable: 2022-03-19 -> 2022-05-06
2022-05-06 06:20:03 +02:00
Evils
64436e0df5
kicad: 6.0.4 -> 6.0.5
2022-05-06 04:48:05 +02:00
Bernardo Meurer
e6b94ad07e
Merge pull request #171602 from malob/treewide-mainProgram
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treewide: add meta.mainProgram to many packages
2022-05-05 18:16:09 -07:00
Will Dietz
4b79fa29a6
verilator: 4.220 -> 4.222
2022-05-05 12:15:54 -05:00
Fabian Affolter
ad619e60da
Merge pull request #171548 from r-ryantm/auto-update/snakemake
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snakemake: 7.5.0 -> 7.6.1
2022-05-05 09:06:17 +02:00
Vincent Laporte
c777cdf5c5
easycrypt-runtest: init at 2022.04
2022-05-05 06:57:50 +02:00
Vincent Laporte
b20934a65c
easycrypt: init at 2022.04
2022-05-05 06:57:50 +02:00
Malo Bourgon
16e15fa68f
treewide: add meta.mainProgram to many packages
2022-05-04 18:08:19 -07:00
R. Ryantm
166b1378fe
snakemake: 7.5.0 -> 7.6.1
2022-05-04 16:06:44 +00:00
Thomas Watson
8030981007
qgroundcontrol: fix build
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Fixes build problems on x86_64 caused by a bug in their vendored version of
gst-plugins-good. Unfortunately I can't `fetchpatch` the fix because it just
changes a submodule pointer. The patch I added was generated from the fix at
https://github.com/mavlink/qgroundcontrol/issues/10140 .
2022-05-03 20:57:46 -05:00
Luis Pedro Coelho
596c5e7ea2
Static bwa
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AR needs to be passed specifically on the command line
2022-05-04 02:20:50 +02:00
Luis Pedro Coelho
4758873378
Static build for samtools
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Curses is not supported (it may be possible to support it)
2022-05-04 02:16:17 +02:00
Luis Pedro Coelho
0b1c28d5a1
Static build for megahit
2022-05-04 02:13:31 +02:00
Fabian Affolter
b10e012588
Merge pull request #171121 from fabaff/pathy-clean
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python310Packages.smart-open: 5.2.1 -> 6.0.0, python39Packages.spacy: 3.2.4 -> 3.3.0, snakemake: 6.15.5 -> 7.5.0
2022-05-02 12:33:22 +02:00
Fabian Affolter
8b176291d7
snakemake: 6.15.5 -> 7.5.0
2022-05-01 13:02:10 +02:00
Vladimír Čunát
c480cc2895
Merge branch 'master' into staging-next-2022-04-23
2022-04-30 23:02:28 +02:00
Guillaume Girol
03e1b22740
Merge pull request #170413 from jdupak/master
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QtRVSim: 0.9.2 -> 0.9.3
2022-04-29 18:42:50 +00:00
Bruno Bzeznik
5661ca1a2d
adolc: init at 2.7.2
2022-04-29 10:38:40 -05:00
R. Ryantm
a82b1b63c3
blast: 2.12.0 -> 2.13.0
2022-04-29 09:39:10 -05:00
Vladimír Čunát
8caa1418f6
Merge branch 'master' into staging-next-2022-04-23
2022-04-28 18:04:16 +02:00
Serge K
1248ea16e1
colmap: fix for cuda11.6/gcc11 ( #169623 )
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* colmap: force nvcc std=c++14 after gcc11 bump
* colmap: optional -> optionals
* colmap: sha256 -> hash
* colmapWithCuda: force CUDA_ENABLED=ON safeguard
* colmapWithCuda: add opengl runpath
2022-04-27 16:09:30 -07:00
github-actions[bot]
8261a7aaba
Merge master into staging-next
2022-04-27 00:02:17 +00:00
Justin Bedo
5eb9f35c44
R: 4.1.3 -> 4.2.0
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Patch needed to past test, as there are extra warnings
in a sandbox build due to lack of internet access.
x
2022-04-27 09:55:00 +10:00
Ryan Mulligan
9fc849704f
Merge pull request #169916 from r-ryantm/auto-update/mavproxy
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mavproxy: 1.8.48 -> 1.8.49
2022-04-26 16:31:50 -07:00
github-actions[bot]
f8c265f433
Merge master into staging-next
2022-04-26 06:01:08 +00:00
Rick van Schijndel
4586388f85
Merge pull request #170320 from andersk/negated-version
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treewide: Simplify negated uses of versionAtLeast, versionOlder
2022-04-26 07:50:15 +02:00
Sandro
7deb7b084d
Merge pull request #170020 from Ma27/bump-stellarium
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stellarium: 0.22.0 -> 0.22.1
2022-04-26 02:37:56 +02:00
Anders Kaseorg
00e66f10fa
coq: Rename internal versionAtLeast helper to coqAtLeast
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To avoid potential confusion with lib.versionAtLeast.
Signed-off-by: Anders Kaseorg <andersk@mit.edu>
2022-04-25 13:35:06 -07:00
github-actions[bot]
073cad8fd6
Merge master into staging-next
2022-04-25 12:04:02 +00:00
markuskowa
b656483a05
Merge pull request #170240 from r-ryantm/auto-update/gromacs
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gromacs: 2022 -> 2022.1
2022-04-25 13:54:46 +02:00
Jakub Dupak
773f7905b9
QtRVSim: 0.9.2 -> 0.9.3
2022-04-25 14:38:39 +03:00
R. Ryantm
0d56b692fa
gromacs: 2022 -> 2022.1
2022-04-25 11:09:40 +00:00
Gabriel Ebner
5838726cb9
calculix: 2.17 -> 2.19
2022-04-25 12:56:36 +02:00
Gabriel Ebner
94f1225197
calculix: fix build with gfortran 10
2022-04-25 12:51:12 +02:00
Sandro
2f517412c4
Merge pull request #165477 from rbreslow/dcm2niix-optional-modules
2022-04-25 11:59:49 +02:00
github-actions[bot]
6a14b5834e
Merge master into staging-next
2022-04-25 00:02:35 +00:00
Ryan Mulligan
f05a748058
Merge pull request #169246 from r-ryantm/auto-update/bada-bib
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bada-bib: 0.6.1 -> 0.6.2
2022-04-24 13:58:11 -07:00
R. Ryantm
e66cf9c6c8
elan: 1.4.0 -> 1.4.1
2022-04-24 14:14:48 -04:00
Maximilian Bosch
7c2fd0ae5d
stellarium: 0.22.0 -> 0.22.1
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ChangeLog: https://github.com/Stellarium/stellarium/releases/tag/v0.22.1
2022-04-23 23:46:33 +02:00
Vladimír Čunát
82ec893b68
Merge branch 'staging' into staging-next
2022-04-23 18:10:57 +02:00
R. Ryantm
8914714916
mavproxy: 1.8.48 -> 1.8.49
2022-04-23 08:24:30 +00:00
Artturi
785373a76f
Merge pull request #166605 from siraben/remove-redundant-stdenv
2022-04-22 20:25:38 +03:00
Artturin
f1c7f19e49
treewide: testVersion -> testers.testVersion
2022-04-22 16:24:27 +03:00
Mauricio Collares
0f29ab871f
sage: update test expectations
2022-04-21 09:08:41 +02:00
Mauricio Collares
5029df7737
giac: 1.6.0-47 -> 1.9.0-5
2022-04-21 09:08:40 +02:00
Jan van Brügge
9aa4c5dbfc
isabelle: Make closer to upstream
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This makes isabelle use the versions of polyml and z3 that are also used
upstream. Additionally it packages the sha1 library that isabelle uses.
Co-authored-by: 1000teslas <47207223+1000teslas@users.noreply.github.com>
2022-04-20 11:22:43 +02:00
Jan van Brügge
2e52d5c892
naproche: 0.1.0.0 -> 2022-04-19
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This fixes the build with GHC 9
2022-04-20 09:14:24 +02:00
veprbl
2511bad8aa
Merge pull request #168973 from veprbl/pr/root5_glibc_fix
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root5: fix for glibc
2022-04-19 14:56:09 -04:00
ajs124
7d59bd47d2
Merge pull request #165341 from r-ryantm/auto-update/verilator
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verilator: 4.218 -> 4.220
2022-04-19 17:52:10 +01:00
R. Ryantm
9919952421
bada-bib: 0.6.1 -> 0.6.2
2022-04-19 00:53:01 +00:00
Rocky Breslow
d1c3fea7ec
dcm2niix: support usage of suggested Cloudflare zlib
2022-04-18 15:00:45 -04:00
Rocky Breslow
9019ce0106
dcm2niix: add maintainer
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Also, fix grammatical error in long description.
2022-04-18 15:00:16 -04:00
Sandro
f37f0ad4e1
Merge pull request #168969 from SuperSandro2000/staging-next-sandro
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Staging next fixes
2022-04-17 00:35:09 +02:00
Dmitry Kalinkin
81f9e28844
root5: fix for glibc
2022-04-16 17:20:16 -04:00
Martin Weinelt
fa1bb283d8
Merge remote-tracking branch 'origin/master' into staging-next
2022-04-16 23:14:55 +02:00
Sandro Jäckel
f1189d812e
fast-downward: substitute version, fix buildInputs, minor cleanup
2022-04-16 22:46:45 +02:00
veprbl
bb5678ef5f
Merge pull request #168733 from veprbl/pr/xfitter_2_2_0
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xfitter: 2.0.1 -> 2.2.0
2022-04-16 16:01:10 -04:00
Ben Siraphob
259fa13d53
treewide: remove nativeBuildInputs that are in stdenv
2022-04-16 21:46:46 +03:00
Fabián Heredia Montiel
5275050ab0
fityk: add -std=c++11
flag for gcc11 and later
2022-04-16 11:11:46 -05:00
Fabián Heredia Montiel
8c5a58144d
fast-downward: 19.12 → 21.12.0
2022-04-16 11:11:46 -05:00
Dmitry Kalinkin
cdc17db882
xfitter: 2.0.1 -> 2.2.0
2022-04-15 22:24:52 -04:00
Fabián Heredia Montiel
8a9d5e296b
cmtk: add -std=c++11
to fix build on gcc11
2022-04-15 11:15:30 -05:00
Martin Weinelt
a7fc5aaa76
Merge remote-tracking branch 'origin/master' into staging-next
2022-04-15 13:30:48 +02:00
Lassulus
92734ac395
Merge pull request #166865 from malob/treewide-mainProgram
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treewide: add meta.mainProgram to many packages
2022-04-15 09:28:00 +01:00
Malo Bourgon
0e802eafad
treewide: add meta.mainProgram to many packages
2022-04-14 10:24:01 -07:00
Vladimír Čunát
d5d94127fd
Merge branch 'staging-next' into staging
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Minor conflicts; I hope I didn't mess up:
pkgs/development/tools/misc/binutils/default.nix
pkgs/games/openjk/default.nix
2022-04-14 09:53:21 +02:00
R. Ryantm
ae6932e7b9
elan: 1.3.1 -> 1.4.0
2022-04-13 20:56:11 -04:00
Luflosi
0a2f8109f4
abc-verifier: 2022.03.04 -> 2022.03.22
2022-04-12 08:38:25 -05:00
Lassulus
8ca12e04fe
Merge pull request #162172 from grnnja/init-jflap
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jflap: init at 7.1
2022-04-12 12:08:26 +01:00
ajs124
9aa337095c
Merge pull request #164699 from r-ryantm/auto-update/mavproxy
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mavproxy: 1.8.46 -> 1.8.48
2022-04-11 20:13:29 +01:00
Sandro
ab1640b19b
Merge pull request #166909 from fedeinthemix/wolfram-engine-2
2022-04-11 13:53:05 +02:00
Federico Beffa
55a070a616
wolfram-for-jupyter-kernel: init at 0.9.2
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Also, add a script 'wolfram-notebook' to easily start a jupyter
notebook for working with the Wolfram Engine.
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
2022-04-11 11:54:09 +02:00
Federico Beffa
2055f85304
wolfram-engine: init at 13.0.1
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Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
2022-04-11 11:54:03 +02:00
Sandro
9b0ef251b3
Merge pull request #167729 from yuuyins/brmodelo
2022-04-10 21:19:44 +02:00
Fabian Affolter
394c9ba5e4
Merge pull request #168132 from r-ryantm/auto-update/calc
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calc: 2.14.0.14 -> 2.14.1.0
2022-04-10 20:56:16 +02:00
github-actions[bot]
bf63dd7434
Merge staging-next into staging
2022-04-10 18:01:38 +00:00
Vladimír Čunát
5e845236f2
Merge branch 'staging-next' into staging
2022-04-10 17:11:36 +02:00
Doron Behar
357ca2e62c
Merge pull request #168130 from alyaeanyx/qalculate-gtk-4.1.1
2022-04-10 16:39:23 +03:00
Lassulus
973fa1917c
Merge pull request #162300 from r-ryantm/auto-update/cwltool
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cwltool: 3.1.20220221074232 -> 3.1.20220224085855
2022-04-10 13:37:54 +01:00
R. Ryantm
6ebcd043e2
calc: 2.14.0.14 -> 2.14.1.0
2022-04-10 12:33:50 +00:00
alyaeanyx
0fc77bcb21
qalculate-gtk: 4.1.0 -> 4.1.1
2022-04-10 13:59:30 +02:00
Artturi
ebf6f84ea2
Merge pull request #164722 from armeenm/bump-eggnog-mapper
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eggnog-mapper: 1.0.3 -> 2.1.7
2022-04-10 14:37:21 +03:00